Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.44□□□□□ -2.18
HOXC9P31274 AL591704.2-201ENST00000421658 181 ntBASIC1.44□□□□□ -2.18
HOXC9P31274 SNX2P2-201ENST00000424553 323 ntBASIC1.44□□□□□ -2.18
HOXC9P31274 RPS27P16-201ENST00000425758 201 ntBASIC1.44□□□□□ -2.18
HOXC9P31274 AC027119.1-201ENST00000440877 241 ntBASIC1.44□□□□□ -2.18
HOXC9P31274 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.44□□□□□ -2.18
HOXC9P31274 MIR4643-201ENST00000577473 78 ntBASIC1.44□□□□□ -2.18
HOXC9P31274 AC062037.2-201ENST00000610137 73 ntBASIC1.44□□□□□ -2.18
HOXC9P31274 Y_RNA.802-201ENST00000614892 130 ntBASIC1.44□□□□□ -2.18
HOXC9P31274 MIR6734-201ENST00000621166 68 ntBASIC1.44□□□□□ -2.18
HOXC9P31274 AC027279.3-201ENST00000625055 122 ntBASIC1.44□□□□□ -2.18
HOXC9P31274 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
HOXC9P31274 SNORD33-201ENST00000362761 85 ntBASIC1.43□□□□□ -2.18
HOXC9P31274 Y_RNA.193-201ENST00000363979 102 ntBASIC1.43□□□□□ -2.18
HOXC9P31274 SNORD14E-201ENST00000364009 85 ntBASIC1.43□□□□□ -2.18
HOXC9P31274 Y_RNA.350-201ENST00000365409 98 ntBASIC1.43□□□□□ -2.18
HOXC9P31274 RNU6-969P-201ENST00000383900 105 ntBASIC1.43□□□□□ -2.18
HOXC9P31274 Y_RNA.452-201ENST00000384202 108 ntBASIC1.43□□□□□ -2.18
HOXC9P31274 RNU6-997P-201ENST00000384725 107 ntBASIC1.43□□□□□ -2.18
HOXC9P31274 Y_RNA.572-201ENST00000384757 98 ntBASIC1.43□□□□□ -2.18
HOXC9P31274 MIR516B2-201ENST00000385190 85 ntBASIC1.43□□□□□ -2.18
HOXC9P31274 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.43□□□□□ -2.18
HOXC9P31274 RNU6-917P-201ENST00000516294 104 ntBASIC1.43□□□□□ -2.18
HOXC9P31274 RNU6-113P-201ENST00000516653 101 ntBASIC1.43□□□□□ -2.18
HOXC9P31274 MIR6788-201ENST00000618842 66 ntBASIC1.43□□□□□ -2.18
HOXC9P31274 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.43□□□□□ -2.18
HOXC9P31274 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
HOXC9P31274 Y_RNA.24-201ENST00000362508 103 ntBASIC1.42□□□□□ -2.18
HOXC9P31274 Y_RNA.82-201ENST00000363000 102 ntBASIC1.42□□□□□ -2.18
HOXC9P31274 Y_RNA.92-201ENST00000363043 102 ntBASIC1.42□□□□□ -2.18
HOXC9P31274 Y_RNA.235-201ENST00000364412 102 ntBASIC1.42□□□□□ -2.18
HOXC9P31274 Y_RNA.306-201ENST00000365015 102 ntBASIC1.42□□□□□ -2.18
HOXC9P31274 Y_RNA.312-201ENST00000365089 102 ntBASIC1.42□□□□□ -2.18
HOXC9P31274 Y_RNA.322-201ENST00000365151 102 ntBASIC1.42□□□□□ -2.18
HOXC9P31274 SNORA8.3-201ENST00000384679 139 ntBASIC1.42□□□□□ -2.18
HOXC9P31274 Y_RNA.562-201ENST00000384695 113 ntBASIC1.42□□□□□ -2.18
HOXC9P31274 MIR526A1-201ENST00000384897 85 ntBASIC1.42□□□□□ -2.18
HOXC9P31274 MIR548J-201ENST00000408833 112 ntBASIC1.42□□□□□ -2.18
HOXC9P31274 SNORD2.1-201ENST00000458762 69 ntBASIC1.42□□□□□ -2.18
HOXC9P31274 Y_RNA.650-201ENST00000459002 102 ntBASIC1.42□□□□□ -2.18
HOXC9P31274 SNORD11-201ENST00000459124 84 ntBASIC1.42□□□□□ -2.18
HOXC9P31274 RPS23P4-201ENST00000487908 423 ntBASIC1.42□□□□□ -2.18
HOXC9P31274 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.42□□□□□ -2.18
HOXC9P31274 Y_RNA.777-201ENST00000516982 102 ntBASIC1.42□□□□□ -2.18
HOXC9P31274 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.42□□□□□ -2.18
HOXC9P31274 Y_RNA.771-201ENST00000598668 102 ntBASIC1.42□□□□□ -2.18
HOXC9P31274 AL049861.1-201ENST00000603130 150 ntBASIC1.42□□□□□ -2.18
HOXC9P31274 SNORD114-21-201ENST00000606412 72 ntBASIC1.42□□□□□ -2.18
HOXC9P31274 Y_RNA.789-201ENST00000622480 102 ntBASIC1.42□□□□□ -2.18
HOXC9P31274 Y_RNA.65-201ENST00000362846 100 ntBASIC1.41□□□□□ -2.18
HOXC9P31274 Y_RNA.307-201ENST00000365022 117 ntBASIC1.41□□□□□ -2.18
HOXC9P31274 Y_RNA.416-201ENST00000384014 113 ntBASIC1.41□□□□□ -2.18
HOXC9P31274 MIR1298-201ENST00000408783 112 ntBASIC1.41□□□□□ -2.18
HOXC9P31274 AC015922.2-201ENST00000435593 184 ntBASIC1.41□□□□□ -2.18
HOXC9P31274 HMGN2P32-201ENST00000444648 269 ntBASIC1.41□□□□□ -2.18
HOXC9P31274 AC023449.1-201ENST00000454464 154 ntBASIC1.41□□□□□ -2.18
HOXC9P31274 SNORD116-28-201ENST00000516123 91 ntBASIC1.41□□□□□ -2.18
HOXC9P31274 MIR3128-201ENST00000581957 66 ntBASIC1.41□□□□□ -2.18
HOXC9P31274 MIR151B-201ENST00000584249 96 ntBASIC1.41□□□□□ -2.18
HOXC9P31274 AL121890.5-201ENST00000620848 304 ntBASIC1.41□□□□□ -2.18
HOXC9P31274 Y_RNA.60-201ENST00000362831 98 ntBASIC1.4□□□□□ -2.19
HOXC9P31274 Y_RNA.76-201ENST00000362931 109 ntBASIC1.4□□□□□ -2.19
HOXC9P31274 MIR452-201ENST00000385020 85 ntBASIC1.4□□□□□ -2.19
HOXC9P31274 MIR526A2-201ENST00000390198 65 ntBASIC1.4□□□□□ -2.19
HOXC9P31274 SNORD72-201ENST00000390994 80 ntBASIC1.4□□□□□ -2.19
HOXC9P31274 AL451046.2-201ENST00000403074 277 ntBASIC1.4□□□□□ -2.19
HOXC9P31274 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.4□□□□□ -2.19
HOXC9P31274 RNU6-322P-201ENST00000516010 103 ntBASIC1.4□□□□□ -2.19
HOXC9P31274 Y_RNA.680-201ENST00000516441 93 ntBASIC1.4□□□□□ -2.19
HOXC9P31274 AC100767.1-201ENST00000528178 123 ntBASIC1.4□□□□□ -2.19
HOXC9P31274 AC008507.4-201ENST00000585464 127 ntBASIC1.4□□□□□ -2.19
HOXC9P31274 BX284668.6-201ENST00000606899 438 ntBASIC1.4□□□□□ -2.19
HOXC9P31274 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.4□□□□□ -2.19
HOXC9P31274 RNY1-201ENST00000364228 113 ntBASIC1.39□□□□□ -2.19
HOXC9P31274 SNORA2.2-201ENST00000365473 135 ntBASIC1.39□□□□□ -2.19
HOXC9P31274 RNU6-442P-201ENST00000383968 104 ntBASIC1.39□□□□□ -2.19
HOXC9P31274 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.39□□□□□ -2.19
HOXC9P31274 MTND1P19-201ENST00000511780 315 ntBASIC1.39□□□□□ -2.19
HOXC9P31274 RNU6-902P-201ENST00000517212 91 ntBASIC1.39□□□□□ -2.19
HOXC9P31274 AL512310.8-201ENST00000550183 120 ntBASIC1.39□□□□□ -2.19
HOXC9P31274 AC090049.2-201ENST00000550377 109 ntBASIC1.39□□□□□ -2.19
HOXC9P31274 AC087685.1-201ENST00000587507 141 ntBASIC1.39□□□□□ -2.19
HOXC9P31274 AL442067.1-201ENST00000613261 223 ntBASIC1.39□□□□□ -2.19
HOXC9P31274 AL161722.3-201ENST00000605789 2983 ntBASIC1.39□□□□□ -2.19
HOXC9P31274 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
HOXC9P31274 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.39□□□□□ -2.19
HOXC9P31274 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
HOXC9P31274 Y_RNA.447-201ENST00000384184 113 ntBASIC1.38□□□□□ -2.19
HOXC9P31274 RNA5SP496-201ENST00000391240 109 ntBASIC1.38□□□□□ -2.19
HOXC9P31274 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC1.38□□□□□ -2.19
HOXC9P31274 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.38□□□□□ -2.19
HOXC9P31274 RNU6-947P-201ENST00000516264 106 ntBASIC1.38□□□□□ -2.19
HOXC9P31274 RNU6-1007P-201ENST00000516586 107 ntBASIC1.38□□□□□ -2.19
HOXC9P31274 RNU6-1223P-201ENST00000517124 104 ntBASIC1.38□□□□□ -2.19
HOXC9P31274 AC090142.3-201ENST00000519012 385 ntBASIC1.38□□□□□ -2.19
HOXC9P31274 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC1.38□□□□□ -2.19
HOXC9P31274 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.38□□□□□ -2.19
HOXC9P31274 MIR4282-201ENST00000583613 67 ntBASIC1.38□□□□□ -2.19
HOXC9P31274 uc_338.4-201ENST00000616635 176 ntBASIC1.38□□□□□ -2.19
HOXC9P31274 AL365265.1-201ENST00000621045 234 ntBASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 172.4 ms