Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AC068700.1-201ENST00000565862 3754 ntBASIC0.56□□□□□ -2.32
CCDC43Q96MW1 Y_RNA.168-201ENST00000363740 102 ntBASIC0.56□□□□□ -2.32
CCDC43Q96MW1 Y_RNA.370-201ENST00000365589 108 ntBASIC0.56□□□□□ -2.32
CCDC43Q96MW1 Y_RNA.463-201ENST00000384271 102 ntBASIC0.56□□□□□ -2.32
CCDC43Q96MW1 SNORA51.10-201ENST00000384418 136 ntBASIC0.56□□□□□ -2.32
CCDC43Q96MW1 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.56□□□□□ -2.32
CCDC43Q96MW1 Y_RNA.718-201ENST00000517110 102 ntBASIC0.56□□□□□ -2.32
CCDC43Q96MW1 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.56□□□□□ -2.32
CCDC43Q96MW1 AC008507.4-201ENST00000585464 127 ntBASIC0.56□□□□□ -2.32
CCDC43Q96MW1 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
CCDC43Q96MW1 RNY1P8-201ENST00000383970 114 ntBASIC0.55□□□□□ -2.32
CCDC43Q96MW1 Y_RNA.458-201ENST00000384240 102 ntBASIC0.55□□□□□ -2.32
CCDC43Q96MW1 MTCO2P33-201ENST00000402100 465 ntBASIC0.55□□□□□ -2.32
CCDC43Q96MW1 AC114737.2-201ENST00000421583 173 ntBASIC0.55□□□□□ -2.32
CCDC43Q96MW1 RNU6-277P-201ENST00000516272 106 ntBASIC0.55□□□□□ -2.32
CCDC43Q96MW1 MIR2681-201ENST00000581814 105 ntBASIC0.55□□□□□ -2.32
CCDC43Q96MW1 Z83818.1-201ENST00000603584 150 ntBASIC0.55□□□□□ -2.32
CCDC43Q96MW1 AC084781.2-201ENST00000615568 161 ntBASIC0.55□□□□□ -2.32
CCDC43Q96MW1 AC243829.3-201ENST00000622177 108 ntBASIC0.55□□□□□ -2.32
CCDC43Q96MW1 MTND1P7-201ENST00000632801 297 ntBASIC0.55□□□□□ -2.32
CCDC43Q96MW1 RNY1-201ENST00000364228 113 ntBASIC0.54□□□□□ -2.32
CCDC43Q96MW1 Y_RNA.384-201ENST00000383909 102 ntBASIC0.54□□□□□ -2.32
CCDC43Q96MW1 RNU6-1237P-201ENST00000384777 107 ntBASIC0.54□□□□□ -2.32
CCDC43Q96MW1 AC138393.2-201ENST00000414742 246 ntBASIC0.54□□□□□ -2.32
CCDC43Q96MW1 AC098934.3-201ENST00000430450 190 ntBASIC0.54□□□□□ -2.32
CCDC43Q96MW1 SNORA20.3-201ENST00000516880 132 ntBASIC0.54□□□□□ -2.32
CCDC43Q96MW1 RPL23AP91-201ENST00000569211 455 ntBASIC0.54□□□□□ -2.32
CCDC43Q96MW1 AL080274.1-201ENST00000605565 220 ntBASIC0.54□□□□□ -2.32
CCDC43Q96MW1 MIR4791-201ENST00000607666 84 ntBASIC0.54□□□□□ -2.32
CCDC43Q96MW1 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.54□□□□□ -2.32
CCDC43Q96MW1 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.54□□□□□ -2.32
CCDC43Q96MW1 AC015726.2-201ENST00000620112 122 ntBASIC0.54□□□□□ -2.32
CCDC43Q96MW1 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.54□□□□□ -2.32
CCDC43Q96MW1 Y_RNA.142-201ENST00000363491 102 ntBASIC0.53□□□□□ -2.32
CCDC43Q96MW1 Y_RNA.537-201ENST00000384626 109 ntBASIC0.53□□□□□ -2.32
CCDC43Q96MW1 SNORD72-201ENST00000390994 80 ntBASIC0.53□□□□□ -2.32
CCDC43Q96MW1 RNU4-30P-201ENST00000410245 143 ntBASIC0.53□□□□□ -2.32
CCDC43Q96MW1 SNORA36B-201ENST00000410438 131 ntBASIC0.53□□□□□ -2.32
CCDC43Q96MW1 AC092628.1-201ENST00000436250 252 ntBASIC0.53□□□□□ -2.32
CCDC43Q96MW1 RNU6-437P-201ENST00000459408 95 ntBASIC0.53□□□□□ -2.32
CCDC43Q96MW1 RPS29P30-201ENST00000600975 111 ntBASIC0.53□□□□□ -2.32
CCDC43Q96MW1 RNA5SP499-201ENST00000363982 119 ntBASIC0.52□□□□□ -2.33
CCDC43Q96MW1 RNU6-1048P-201ENST00000364054 107 ntBASIC0.52□□□□□ -2.33
CCDC43Q96MW1 RNU6-937P-201ENST00000384325 106 ntBASIC0.52□□□□□ -2.33
CCDC43Q96MW1 MIR598-201ENST00000384868 97 ntBASIC0.52□□□□□ -2.33
CCDC43Q96MW1 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.52□□□□□ -2.33
CCDC43Q96MW1 snoU13.21-201ENST00000459368 105 ntBASIC0.52□□□□□ -2.33
CCDC43Q96MW1 RNA5SP436-201ENST00000516020 115 ntBASIC0.52□□□□□ -2.33
CCDC43Q96MW1 AC092447.9-201ENST00000603395 144 ntBASIC0.52□□□□□ -2.33
CCDC43Q96MW1 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.52□□□□□ -2.33
CCDC43Q96MW1 Y_RNA.551-201ENST00000384661 102 ntBASIC0.51□□□□□ -2.33
CCDC43Q96MW1 AL603910.2-201ENST00000407268 136 ntBASIC0.51□□□□□ -2.33
CCDC43Q96MW1 RNU2-14P-201ENST00000411053 191 ntBASIC0.51□□□□□ -2.33
CCDC43Q96MW1 MTND1P14-201ENST00000427400 950 ntBASIC0.51□□□□□ -2.33
CCDC43Q96MW1 AC010655.3-201ENST00000478818 450 ntBASIC0.51□□□□□ -2.33
CCDC43Q96MW1 AL512605.2-201ENST00000592972 256 ntBASIC0.51□□□□□ -2.33
CCDC43Q96MW1 AL121655.1-201ENST00000605811 308 ntBASIC0.51□□□□□ -2.33
CCDC43Q96MW1 AC006441.5-201ENST00000612680 209 ntBASIC0.51□□□□□ -2.33
CCDC43Q96MW1 AC104985.2-201ENST00000620598 500 ntBASIC0.51□□□□□ -2.33
CCDC43Q96MW1 MIR1302-1-201ENST00000637932 143 ntBASIC0.51□□□□□ -2.33
CCDC43Q96MW1 RNU6-369P-201ENST00000362515 102 ntBASIC0.5□□□□□ -2.33
CCDC43Q96MW1 SNORA1.2-201ENST00000365189 134 ntBASIC0.5□□□□□ -2.33
CCDC43Q96MW1 Y_RNA.376-201ENST00000365638 108 ntBASIC0.5□□□□□ -2.33
CCDC43Q96MW1 Y_RNA.496-201ENST00000384444 101 ntBASIC0.5□□□□□ -2.33
CCDC43Q96MW1 RNU6-21P-201ENST00000384710 107 ntBASIC0.5□□□□□ -2.33
CCDC43Q96MW1 MIR613-201ENST00000385248 95 ntBASIC0.5□□□□□ -2.33
CCDC43Q96MW1 RNU7-141P-201ENST00000459304 62 ntBASIC0.5□□□□□ -2.33
CCDC43Q96MW1 Y_RNA.661-201ENST00000516003 99 ntBASIC0.5□□□□□ -2.33
CCDC43Q96MW1 RNU6-1007P-201ENST00000516586 107 ntBASIC0.5□□□□□ -2.33
CCDC43Q96MW1 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC0.5□□□□□ -2.33
CCDC43Q96MW1 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.5□□□□□ -2.33
CCDC43Q96MW1 Y_RNA.143-201ENST00000363520 106 ntBASIC0.49□□□□□ -2.33
CCDC43Q96MW1 SNORD18A-201ENST00000363753 72 ntBASIC0.49□□□□□ -2.33
CCDC43Q96MW1 RNU6-674P-201ENST00000363831 107 ntBASIC0.49□□□□□ -2.33
CCDC43Q96MW1 SNORD45.3-201ENST00000363836 72 ntBASIC0.49□□□□□ -2.33
CCDC43Q96MW1 Y_RNA.187-201ENST00000363918 113 ntBASIC0.49□□□□□ -2.33
CCDC43Q96MW1 RNU4-50P-201ENST00000364361 141 ntBASIC0.49□□□□□ -2.33
CCDC43Q96MW1 RNU6-934P-201ENST00000365154 107 ntBASIC0.49□□□□□ -2.33
CCDC43Q96MW1 SNORD63-201ENST00000384262 68 ntBASIC0.49□□□□□ -2.33
CCDC43Q96MW1 RNU6-205P-201ENST00000390858 107 ntBASIC0.49□□□□□ -2.33
CCDC43Q96MW1 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.49□□□□□ -2.33
CCDC43Q96MW1 RNU6-847P-201ENST00000411115 108 ntBASIC0.49□□□□□ -2.33
CCDC43Q96MW1 AC015818.7-201ENST00000428754 109 ntBASIC0.49□□□□□ -2.33
CCDC43Q96MW1 AC087499.7-201ENST00000441958 109 ntBASIC0.49□□□□□ -2.33
CCDC43Q96MW1 RNU4-77P-201ENST00000516692 156 ntBASIC0.49□□□□□ -2.33
CCDC43Q96MW1 AC099654.14-201ENST00000638599 341 ntBASIC0.49□□□□□ -2.33
CCDC43Q96MW1 Y_RNA.39-201ENST00000362620 98 ntBASIC0.48□□□□□ -2.33
CCDC43Q96MW1 RNU6-801P-201ENST00000364087 105 ntBASIC0.48□□□□□ -2.33
CCDC43Q96MW1 RNU6-580P-201ENST00000365159 107 ntBASIC0.48□□□□□ -2.33
CCDC43Q96MW1 Y_RNA.383-201ENST00000383855 97 ntBASIC0.48□□□□□ -2.33
CCDC43Q96MW1 Y_RNA.439-201ENST00000384119 94 ntBASIC0.48□□□□□ -2.33
CCDC43Q96MW1 MIR936-201ENST00000401264 98 ntBASIC0.48□□□□□ -2.33
CCDC43Q96MW1 SNORD83.1-201ENST00000411362 77 ntBASIC0.48□□□□□ -2.33
CCDC43Q96MW1 AL160004.2-201ENST00000432935 350 ntBASIC0.48□□□□□ -2.33
CCDC43Q96MW1 SCARNA8-201ENST00000515924 131 ntBASIC0.48□□□□□ -2.33
CCDC43Q96MW1 RNU4-57P-201ENST00000515980 135 ntBASIC0.48□□□□□ -2.33
CCDC43Q96MW1 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.48□□□□□ -2.33
CCDC43Q96MW1 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.48□□□□□ -2.33
CCDC43Q96MW1 AC243994.1-201ENST00000618627 109 ntBASIC0.48□□□□□ -2.33
CCDC43Q96MW1 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.47□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 187.5 ms