Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC108706.1-201ENST00000611053 297 ntBASIC1.68□□□□□ -2.14
CCDC28AQ8IWP9 SNORD45.3-201ENST00000363836 72 ntBASIC1.67□□□□□ -2.14
CCDC28AQ8IWP9 Y_RNA.182-201ENST00000363880 111 ntBASIC1.67□□□□□ -2.14
CCDC28AQ8IWP9 RNU6-484P-201ENST00000384016 107 ntBASIC1.67□□□□□ -2.14
CCDC28AQ8IWP9 Y_RNA.785-201ENST00000384290 109 ntBASIC1.67□□□□□ -2.14
CCDC28AQ8IWP9 RNU6-1065P-201ENST00000384513 106 ntBASIC1.67□□□□□ -2.14
CCDC28AQ8IWP9 MIR526A1-201ENST00000384897 85 ntBASIC1.67□□□□□ -2.14
CCDC28AQ8IWP9 MIR136-201ENST00000385207 82 ntBASIC1.67□□□□□ -2.14
CCDC28AQ8IWP9 MIR634-201ENST00000385208 97 ntBASIC1.67□□□□□ -2.14
CCDC28AQ8IWP9 SNORA79-201ENST00000408376 140 ntBASIC1.67□□□□□ -2.14
CCDC28AQ8IWP9 AC108059.2-201ENST00000434626 151 ntBASIC1.67□□□□□ -2.14
CCDC28AQ8IWP9 RNU6-917P-201ENST00000516294 104 ntBASIC1.67□□□□□ -2.14
CCDC28AQ8IWP9 RNA5SP153-201ENST00000516498 76 ntBASIC1.67□□□□□ -2.14
CCDC28AQ8IWP9 AC109810.1-201ENST00000534066 224 ntBASIC1.67□□□□□ -2.14
CCDC28AQ8IWP9 AC090049.2-201ENST00000550377 109 ntBASIC1.67□□□□□ -2.14
CCDC28AQ8IWP9 MIR3162-201ENST00000581818 82 ntBASIC1.67□□□□□ -2.14
CCDC28AQ8IWP9 AC072026.1-201ENST00000605023 201 ntBASIC1.67□□□□□ -2.14
CCDC28AQ8IWP9 AL365434.2-201ENST00000607979 234 ntBASIC1.67□□□□□ -2.14
CCDC28AQ8IWP9 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.67□□□□□ -2.14
CCDC28AQ8IWP9 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
CCDC28AQ8IWP9 AL442644.1-201ENST00000454390 3105 ntBASIC1.66□□□□□ -2.14
CCDC28AQ8IWP9 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
CCDC28AQ8IWP9 Y_RNA.486-201ENST00000384398 107 ntBASIC1.66□□□□□ -2.14
CCDC28AQ8IWP9 SNORA67.4-201ENST00000384688 142 ntBASIC1.66□□□□□ -2.14
CCDC28AQ8IWP9 RNU1-78P-201ENST00000391248 165 ntBASIC1.66□□□□□ -2.14
CCDC28AQ8IWP9 RNU2-70P-201ENST00000410718 179 ntBASIC1.66□□□□□ -2.14
CCDC28AQ8IWP9 SNX2P2-201ENST00000424553 323 ntBASIC1.66□□□□□ -2.14
CCDC28AQ8IWP9 AC245517.4-201ENST00000448601 281 ntBASIC1.66□□□□□ -2.14
CCDC28AQ8IWP9 AL121914.1-201ENST00000450188 156 ntBASIC1.66□□□□□ -2.14
CCDC28AQ8IWP9 SNRPGP8-201ENST00000454064 226 ntBASIC1.66□□□□□ -2.14
CCDC28AQ8IWP9 RNA5SP200-201ENST00000516360 103 ntBASIC1.66□□□□□ -2.14
CCDC28AQ8IWP9 SNORA81.3-201ENST00000517283 198 ntBASIC1.66□□□□□ -2.14
CCDC28AQ8IWP9 AC019176.1-201ENST00000518519 225 ntBASIC1.66□□□□□ -2.14
CCDC28AQ8IWP9 AP002392.1-201ENST00000537692 208 ntBASIC1.66□□□□□ -2.14
CCDC28AQ8IWP9 AL160236.1-201ENST00000556317 195 ntBASIC1.66□□□□□ -2.14
CCDC28AQ8IWP9 MIR3937-201ENST00000580135 106 ntBASIC1.66□□□□□ -2.14
CCDC28AQ8IWP9 AL513534.2-201ENST00000603836 250 ntBASIC1.66□□□□□ -2.14
CCDC28AQ8IWP9 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
CCDC28AQ8IWP9 Y_RNA.75-201ENST00000362927 97 ntBASIC1.65□□□□□ -2.15
CCDC28AQ8IWP9 Y_RNA.233-201ENST00000364407 101 ntBASIC1.65□□□□□ -2.15
CCDC28AQ8IWP9 RNU6-275P-201ENST00000364910 107 ntBASIC1.65□□□□□ -2.15
CCDC28AQ8IWP9 MIR516B2-201ENST00000385190 85 ntBASIC1.65□□□□□ -2.15
CCDC28AQ8IWP9 AL451046.2-201ENST00000403074 277 ntBASIC1.65□□□□□ -2.15
CCDC28AQ8IWP9 RNU4-43P-201ENST00000410628 137 ntBASIC1.65□□□□□ -2.15
CCDC28AQ8IWP9 AC027119.1-201ENST00000440877 241 ntBASIC1.65□□□□□ -2.15
CCDC28AQ8IWP9 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC1.65□□□□□ -2.15
CCDC28AQ8IWP9 RNA5SP445-201ENST00000515889 115 ntBASIC1.65□□□□□ -2.15
CCDC28AQ8IWP9 RNU6-365P-201ENST00000517113 106 ntBASIC1.65□□□□□ -2.15
CCDC28AQ8IWP9 FAM106DP-201ENST00000586416 501 ntBASIC1.65□□□□□ -2.15
CCDC28AQ8IWP9 MIR6873-201ENST00000622788 63 ntBASIC1.65□□□□□ -2.15
CCDC28AQ8IWP9 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.64□□□□□ -2.15
CCDC28AQ8IWP9 MTND5P15-201ENST00000434246 349 ntBASIC1.64□□□□□ -2.15
CCDC28AQ8IWP9 SNRPGP13-201ENST00000442212 177 ntBASIC1.64□□□□□ -2.15
CCDC28AQ8IWP9 RNU6-561P-201ENST00000516222 102 ntBASIC1.64□□□□□ -2.15
CCDC28AQ8IWP9 RNU6-830P-201ENST00000516353 107 ntBASIC1.64□□□□□ -2.15
CCDC28AQ8IWP9 RNA5SP281-201ENST00000516504 135 ntBASIC1.64□□□□□ -2.15
CCDC28AQ8IWP9 RNU6-197P-201ENST00000516680 100 ntBASIC1.64□□□□□ -2.15
CCDC28AQ8IWP9 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
CCDC28AQ8IWP9 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
CCDC28AQ8IWP9 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC1.63□□□□□ -2.15
CCDC28AQ8IWP9 Y_RNA.634-201ENST00000364811 113 ntBASIC1.63□□□□□ -2.15
CCDC28AQ8IWP9 RNA5SP363-201ENST00000365072 115 ntBASIC1.63□□□□□ -2.15
CCDC28AQ8IWP9 SNORD24-201ENST00000383884 75 ntBASIC1.63□□□□□ -2.15
CCDC28AQ8IWP9 Y_RNA.412-201ENST00000384001 104 ntBASIC1.63□□□□□ -2.15
CCDC28AQ8IWP9 MIR221-201ENST00000385135 110 ntBASIC1.63□□□□□ -2.15
CCDC28AQ8IWP9 MIR548O-201ENST00000408583 114 ntBASIC1.63□□□□□ -2.15
CCDC28AQ8IWP9 RNU7-120P-201ENST00000459334 63 ntBASIC1.63□□□□□ -2.15
CCDC28AQ8IWP9 RNU6-504P-201ENST00000516568 104 ntBASIC1.63□□□□□ -2.15
CCDC28AQ8IWP9 RNU6-922P-201ENST00000516753 99 ntBASIC1.63□□□□□ -2.15
CCDC28AQ8IWP9 RNU6-250P-201ENST00000516958 103 ntBASIC1.63□□□□□ -2.15
CCDC28AQ8IWP9 MRPS18CP4-201ENST00000535821 231 ntBASIC1.63□□□□□ -2.15
CCDC28AQ8IWP9 AC097639.2-201ENST00000603159 172 ntBASIC1.63□□□□□ -2.15
CCDC28AQ8IWP9 AC015726.2-201ENST00000620112 122 ntBASIC1.63□□□□□ -2.15
CCDC28AQ8IWP9 Y_RNA.666-201ENST00000516187 112 ntBASIC1.62□□□□□ -2.15
CCDC28AQ8IWP9 RNU6-182P-201ENST00000516970 105 ntBASIC1.62□□□□□ -2.15
CCDC28AQ8IWP9 AC022559.1-201ENST00000520905 205 ntBASIC1.62□□□□□ -2.15
CCDC28AQ8IWP9 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.62□□□□□ -2.15
CCDC28AQ8IWP9 MIR4285-201ENST00000581001 85 ntBASIC1.62□□□□□ -2.15
CCDC28AQ8IWP9 AC004792.1-201ENST00000614523 137 ntBASIC1.62□□□□□ -2.15
CCDC28AQ8IWP9 U6.106-201ENST00000636360 105 ntBASIC1.62□□□□□ -2.15
CCDC28AQ8IWP9 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.62□□□□□ -2.15
CCDC28AQ8IWP9 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
CCDC28AQ8IWP9 Y_RNA.91-201ENST00000363042 107 ntBASIC1.61□□□□□ -2.15
CCDC28AQ8IWP9 RNU4-53P-201ENST00000410828 140 ntBASIC1.61□□□□□ -2.15
CCDC28AQ8IWP9 RPL30P7-201ENST00000479312 323 ntBASIC1.61□□□□□ -2.15
CCDC28AQ8IWP9 RNU7-25P-201ENST00000516544 62 ntBASIC1.61□□□□□ -2.15
CCDC28AQ8IWP9 MIR4435-1-201ENST00000582552 80 ntBASIC1.61□□□□□ -2.15
CCDC28AQ8IWP9 AL357312.1-201ENST00000603879 298 ntBASIC1.61□□□□□ -2.15
CCDC28AQ8IWP9 GHRLOS.1-201ENST00000610995 70 ntBASIC1.61□□□□□ -2.15
CCDC28AQ8IWP9 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.61□□□□□ -2.15
CCDC28AQ8IWP9 Y_RNA.23-201ENST00000362496 106 ntBASIC1.6□□□□□ -2.15
CCDC28AQ8IWP9 Y_RNA.66-201ENST00000362862 102 ntBASIC1.6□□□□□ -2.15
CCDC28AQ8IWP9 RNU6-312P-201ENST00000364629 107 ntBASIC1.6□□□□□ -2.15
CCDC28AQ8IWP9 Y_RNA.510-201ENST00000384511 114 ntBASIC1.6□□□□□ -2.15
CCDC28AQ8IWP9 SNORD41-201ENST00000386967 70 ntBASIC1.6□□□□□ -2.15
CCDC28AQ8IWP9 RNA5SP508-201ENST00000411327 119 ntBASIC1.6□□□□□ -2.15
CCDC28AQ8IWP9 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.6□□□□□ -2.15
CCDC28AQ8IWP9 AC107393.1-201ENST00000512403 346 ntBASIC1.6□□□□□ -2.15
CCDC28AQ8IWP9 RNU6-693P-201ENST00000516134 107 ntBASIC1.6□□□□□ -2.15
CCDC28AQ8IWP9 RNU6-1219P-201ENST00000516143 112 ntBASIC1.6□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 295.1 ms