Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SNORA40.15-201ENST00000516884 107 ntBASIC0.97□□□□□ -2.25
PTPN4P29074 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.97□□□□□ -2.25
PTPN4P29074 MIR151B-201ENST00000584249 96 ntBASIC0.97□□□□□ -2.25
PTPN4P29074 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.97□□□□□ -2.25
PTPN4P29074 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
PTPN4P29074 snoU2_19.2-201ENST00000363024 80 ntBASIC0.96□□□□□ -2.26
PTPN4P29074 RNU6-770P-201ENST00000363929 105 ntBASIC0.96□□□□□ -2.26
PTPN4P29074 Y_RNA.210-201ENST00000364161 110 ntBASIC0.96□□□□□ -2.26
PTPN4P29074 snoU2-30.1-201ENST00000365012 70 ntBASIC0.96□□□□□ -2.26
PTPN4P29074 Y_RNA.569-201ENST00000384749 103 ntBASIC0.96□□□□□ -2.26
PTPN4P29074 MIR200A-201ENST00000384875 90 ntBASIC0.96□□□□□ -2.26
PTPN4P29074 RNU6-910P-201ENST00000390844 107 ntBASIC0.96□□□□□ -2.26
PTPN4P29074 MIR548J-201ENST00000408833 112 ntBASIC0.96□□□□□ -2.26
PTPN4P29074 SNORA36B-201ENST00000410438 131 ntBASIC0.96□□□□□ -2.26
PTPN4P29074 POLR2J4-204ENST00000418424 324 ntBASIC0.96□□□□□ -2.26
PTPN4P29074 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.96□□□□□ -2.26
PTPN4P29074 MTCO1P5-201ENST00000433573 344 ntBASIC0.96□□□□□ -2.26
PTPN4P29074 HMGN2P32-201ENST00000444648 269 ntBASIC0.96□□□□□ -2.26
PTPN4P29074 AC048334.1-201ENST00000477975 159 ntBASIC0.96□□□□□ -2.26
PTPN4P29074 AC098869.1-201ENST00000481627 292 ntBASIC0.96□□□□□ -2.26
PTPN4P29074 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.96□□□□□ -2.26
PTPN4P29074 RNU6-947P-201ENST00000516264 106 ntBASIC0.96□□□□□ -2.26
PTPN4P29074 RNU6-764P-201ENST00000516396 105 ntBASIC0.96□□□□□ -2.26
PTPN4P29074 RNU6-1137P-201ENST00000517073 99 ntBASIC0.96□□□□□ -2.26
PTPN4P29074 RNU6-1223P-201ENST00000517124 104 ntBASIC0.96□□□□□ -2.26
PTPN4P29074 AC090142.3-201ENST00000519012 385 ntBASIC0.96□□□□□ -2.26
PTPN4P29074 AC022709.1-201ENST00000615967 87 ntBASIC0.96□□□□□ -2.26
PTPN4P29074 AC007742.2-201ENST00000618226 398 ntBASIC0.96□□□□□ -2.26
PTPN4P29074 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
PTPN4P29074 RNU6-1209P-201ENST00000363655 107 ntBASIC0.95□□□□□ -2.26
PTPN4P29074 RNU6-674P-201ENST00000363831 107 ntBASIC0.95□□□□□ -2.26
PTPN4P29074 RNY1-201ENST00000364228 113 ntBASIC0.95□□□□□ -2.26
PTPN4P29074 RNU6-1187P-201ENST00000364771 110 ntBASIC0.95□□□□□ -2.26
PTPN4P29074 RNU6-806P-201ENST00000365147 105 ntBASIC0.95□□□□□ -2.26
PTPN4P29074 RNU6-290P-201ENST00000365212 101 ntBASIC0.95□□□□□ -2.26
PTPN4P29074 SNORA33.2-201ENST00000365413 134 ntBASIC0.95□□□□□ -2.26
PTPN4P29074 MIR516B2-201ENST00000385190 85 ntBASIC0.95□□□□□ -2.26
PTPN4P29074 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.95□□□□□ -2.26
PTPN4P29074 RPL21P38-201ENST00000418090 167 ntBASIC0.95□□□□□ -2.26
PTPN4P29074 AC063976.4-201ENST00000421971 163 ntBASIC0.95□□□□□ -2.26
PTPN4P29074 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.95□□□□□ -2.26
PTPN4P29074 RNU6-437P-201ENST00000459408 95 ntBASIC0.95□□□□□ -2.26
PTPN4P29074 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.95□□□□□ -2.26
PTPN4P29074 SNORD111.1-201ENST00000516421 86 ntBASIC0.95□□□□□ -2.26
PTPN4P29074 RNU6-1153P-201ENST00000516760 105 ntBASIC0.95□□□□□ -2.26
PTPN4P29074 AC005357.1-201ENST00000588399 301 ntBASIC0.95□□□□□ -2.26
PTPN4P29074 AL096861.1-201ENST00000610899 123 ntBASIC0.95□□□□□ -2.26
PTPN4P29074 AC134026.1-201ENST00000623249 2239 ntBASIC0.95□□□□□ -2.26
PTPN4P29074 Y_RNA.11-201ENST00000362375 109 ntBASIC0.94□□□□□ -2.26
PTPN4P29074 Y_RNA.19-201ENST00000362462 99 ntBASIC0.94□□□□□ -2.26
PTPN4P29074 Y_RNA.26-201ENST00000362539 101 ntBASIC0.94□□□□□ -2.26
PTPN4P29074 Y_RNA.153-201ENST00000363615 91 ntBASIC0.94□□□□□ -2.26
PTPN4P29074 RNU4-38P-201ENST00000364472 129 ntBASIC0.94□□□□□ -2.26
PTPN4P29074 SNORD114-24-201ENST00000365029 72 ntBASIC0.94□□□□□ -2.26
PTPN4P29074 RNU6-1227P-201ENST00000383981 107 ntBASIC0.94□□□□□ -2.26
PTPN4P29074 Y_RNA.541-201ENST00000384640 113 ntBASIC0.94□□□□□ -2.26
PTPN4P29074 MIR215-201ENST00000384858 110 ntBASIC0.94□□□□□ -2.26
PTPN4P29074 MIR136-201ENST00000385207 82 ntBASIC0.94□□□□□ -2.26
PTPN4P29074 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.94□□□□□ -2.26
PTPN4P29074 NDUFA4P2-201ENST00000489989 244 ntBASIC0.94□□□□□ -2.26
PTPN4P29074 MRPS35P2-201ENST00000508242 191 ntBASIC0.94□□□□□ -2.26
PTPN4P29074 RNY3P15-201ENST00000516297 97 ntBASIC0.94□□□□□ -2.26
PTPN4P29074 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.94□□□□□ -2.26
PTPN4P29074 JPX_2.1-201ENST00000614161 69 ntBASIC0.94□□□□□ -2.26
PTPN4P29074 AL442644.1-201ENST00000454390 3105 ntBASIC0.93□□□□□ -2.26
PTPN4P29074 RNU6-763P-201ENST00000390865 106 ntBASIC0.93□□□□□ -2.26
PTPN4P29074 MTCO2P33-201ENST00000402100 465 ntBASIC0.93□□□□□ -2.26
PTPN4P29074 AC005534.2-201ENST00000431047 433 ntBASIC0.93□□□□□ -2.26
PTPN4P29074 SNORD79.1-201ENST00000516069 84 ntBASIC0.93□□□□□ -2.26
PTPN4P29074 RNU2-31P-201ENST00000516954 155 ntBASIC0.93□□□□□ -2.26
PTPN4P29074 MIR2681-201ENST00000581814 105 ntBASIC0.93□□□□□ -2.26
PTPN4P29074 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.93□□□□□ -2.26
PTPN4P29074 AC087685.1-201ENST00000587507 141 ntBASIC0.93□□□□□ -2.26
PTPN4P29074 AC044792.1-201ENST00000593294 196 ntBASIC0.93□□□□□ -2.26
PTPN4P29074 AC211469.2-201ENST00000605461 205 ntBASIC0.93□□□□□ -2.26
PTPN4P29074 MIR6857-201ENST00000613267 93 ntBASIC0.93□□□□□ -2.26
PTPN4P29074 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
PTPN4P29074 Y_RNA.64-201ENST00000362845 102 ntBASIC0.92□□□□□ -2.26
PTPN4P29074 Y_RNA.152-201ENST00000363578 100 ntBASIC0.92□□□□□ -2.26
PTPN4P29074 RNU6-899P-201ENST00000363947 107 ntBASIC0.92□□□□□ -2.26
PTPN4P29074 SNORD14E-201ENST00000364009 85 ntBASIC0.92□□□□□ -2.26
PTPN4P29074 Y_RNA.354-201ENST00000365448 111 ntBASIC0.92□□□□□ -2.26
PTPN4P29074 Y_RNA.363-201ENST00000365529 113 ntBASIC0.92□□□□□ -2.26
PTPN4P29074 MIR532-201ENST00000385025 91 ntBASIC0.92□□□□□ -2.26
PTPN4P29074 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.92□□□□□ -2.26
PTPN4P29074 MIR1278-201ENST00000408753 81 ntBASIC0.92□□□□□ -2.26
PTPN4P29074 RNU6-985P-201ENST00000410182 104 ntBASIC0.92□□□□□ -2.26
PTPN4P29074 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.92□□□□□ -2.26
PTPN4P29074 snoU13.25-201ENST00000458945 104 ntBASIC0.92□□□□□ -2.26
PTPN4P29074 Y_RNA.637-201ENST00000459424 114 ntBASIC0.92□□□□□ -2.26
PTPN4P29074 SNORA74.3-201ENST00000517108 154 ntBASIC0.92□□□□□ -2.26
PTPN4P29074 MIR3192-201ENST00000584920 77 ntBASIC0.92□□□□□ -2.26
PTPN4P29074 MIR6515-201ENST00000619843 57 ntBASIC0.92□□□□□ -2.26
PTPN4P29074 MIR373-201ENST00000362273 69 ntBASIC0.91□□□□□ -2.26
PTPN4P29074 Y_RNA.242-201ENST00000364473 110 ntBASIC0.91□□□□□ -2.26
PTPN4P29074 RNU6-326P-201ENST00000365480 107 ntBASIC0.91□□□□□ -2.26
PTPN4P29074 RNU6-639P-201ENST00000384074 107 ntBASIC0.91□□□□□ -2.26
PTPN4P29074 SNRPGP14-201ENST00000435400 219 ntBASIC0.91□□□□□ -2.26
PTPN4P29074 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.91□□□□□ -2.26
PTPN4P29074 AC245047.8-201ENST00000456455 284 ntBASIC0.91□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 218.6 ms