Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AL513043.2-201ENST00000573941 143 ntBASIC3.67□□□□□ -1.82
COL9A1P20849 AC110741.2-201ENST00000605278 268 ntBASIC3.67□□□□□ -1.82
COL9A1P20849 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.67□□□□□ -1.82
COL9A1P20849 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.67□□□□□ -1.82
COL9A1P20849 AC007336.1-201ENST00000576365 3828 ntBASIC3.66□□□□□ -1.82
COL9A1P20849 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL9A1P20849 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL9A1P20849 RNA5SP493-201ENST00000364115 91 ntBASIC3.66□□□□□ -1.82
COL9A1P20849 MIR452-201ENST00000385020 85 ntBASIC3.66□□□□□ -1.82
COL9A1P20849 RNU6-447P-201ENST00000410293 104 ntBASIC3.66□□□□□ -1.82
COL9A1P20849 RN7SKP111-201ENST00000410349 271 ntBASIC3.66□□□□□ -1.82
COL9A1P20849 RNU6-1118P-201ENST00000410382 104 ntBASIC3.66□□□□□ -1.82
COL9A1P20849 RNU6-1076P-201ENST00000410397 104 ntBASIC3.66□□□□□ -1.82
COL9A1P20849 RNU6-355P-201ENST00000410427 104 ntBASIC3.66□□□□□ -1.82
COL9A1P20849 RNU6-791P-201ENST00000410467 104 ntBASIC3.66□□□□□ -1.82
COL9A1P20849 RNU6-705P-201ENST00000410601 104 ntBASIC3.66□□□□□ -1.82
COL9A1P20849 RNU6-1100P-201ENST00000410691 104 ntBASIC3.66□□□□□ -1.82
COL9A1P20849 RNU6-860P-201ENST00000410860 104 ntBASIC3.66□□□□□ -1.82
COL9A1P20849 RNU6-1217P-201ENST00000411276 104 ntBASIC3.66□□□□□ -1.82
COL9A1P20849 RNU6-785P-201ENST00000411324 104 ntBASIC3.66□□□□□ -1.82
COL9A1P20849 GTF3AP2-201ENST00000557014 266 ntBASIC3.66□□□□□ -1.82
COL9A1P20849 U6.90-201ENST00000614007 104 ntBASIC3.66□□□□□ -1.82
COL9A1P20849 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC3.66□□□□□ -1.82
COL9A1P20849 U6.70-201ENST00000620287 104 ntBASIC3.66□□□□□ -1.82
COL9A1P20849 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC3.66□□□□□ -1.82
COL9A1P20849 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL9A1P20849 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.65□□□□□ -1.82
COL9A1P20849 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
COL9A1P20849 LINC02471-203ENST00000641941 4752 ntBASIC3.65□□□□□ -1.82
COL9A1P20849 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.83
COL9A1P20849 Y_RNA.173-201ENST00000363776 113 ntBASIC3.65□□□□□ -1.83
COL9A1P20849 MIR136-201ENST00000385207 82 ntBASIC3.65□□□□□ -1.83
COL9A1P20849 SNORD17-201ENST00000390930 237 ntBASIC3.65□□□□□ -1.83
COL9A1P20849 AL034345.1-201ENST00000407768 123 ntBASIC3.65□□□□□ -1.83
COL9A1P20849 MIR1287-201ENST00000408492 90 ntBASIC3.65□□□□□ -1.83
COL9A1P20849 RNU6-1190P-201ENST00000410811 104 ntBASIC3.65□□□□□ -1.83
COL9A1P20849 RNA5SP306-201ENST00000411087 107 ntBASIC3.65□□□□□ -1.83
COL9A1P20849 SPINT5P-201ENST00000448174 155 ntBASIC3.65□□□□□ -1.83
COL9A1P20849 AC015712.3-201ENST00000559380 164 ntBASIC3.65□□□□□ -1.83
COL9A1P20849 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.65□□□□□ -1.83
COL9A1P20849 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL9A1P20849 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL9A1P20849 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.65□□□□□ -1.83
COL9A1P20849 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
COL9A1P20849 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL9A1P20849 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
COL9A1P20849 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.64□□□□□ -1.83
COL9A1P20849 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL9A1P20849 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
COL9A1P20849 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.64□□□□□ -1.83
COL9A1P20849 Y_RNA.508-201ENST00000384502 114 ntBASIC3.64□□□□□ -1.83
COL9A1P20849 MIR3074-201ENST00000384885 81 ntBASIC3.64□□□□□ -1.83
COL9A1P20849 RNU6-1307P-201ENST00000391012 103 ntBASIC3.64□□□□□ -1.83
COL9A1P20849 MIR1236-201ENST00000408340 102 ntBASIC3.64□□□□□ -1.83
COL9A1P20849 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC3.64□□□□□ -1.83
COL9A1P20849 AC245517.4-201ENST00000448601 281 ntBASIC3.64□□□□□ -1.83
COL9A1P20849 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL9A1P20849 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL9A1P20849 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
COL9A1P20849 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL9A1P20849 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL9A1P20849 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
COL9A1P20849 AC093831.2-201ENST00000624393 3427 ntBASIC3.63□□□□□ -1.83
COL9A1P20849 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
COL9A1P20849 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL9A1P20849 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC3.63□□□□□ -1.83
COL9A1P20849 RNU6-950P-201ENST00000384651 107 ntBASIC3.63□□□□□ -1.83
COL9A1P20849 RNU6-913P-201ENST00000390913 95 ntBASIC3.63□□□□□ -1.83
COL9A1P20849 U8.16-201ENST00000391279 133 ntBASIC3.63□□□□□ -1.83
COL9A1P20849 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.63□□□□□ -1.83
COL9A1P20849 AC004223.1-201ENST00000479840 271 ntBASIC3.63□□□□□ -1.83
COL9A1P20849 AC234781.5-201ENST00000508429 271 ntBASIC3.63□□□□□ -1.83
COL9A1P20849 RNU6-539P-201ENST00000516665 103 ntBASIC3.63□□□□□ -1.83
COL9A1P20849 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.63□□□□□ -1.83
COL9A1P20849 MIR3169-201ENST00000578032 83 ntBASIC3.63□□□□□ -1.83
COL9A1P20849 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC3.63□□□□□ -1.83
COL9A1P20849 AC243994.1-201ENST00000618627 109 ntBASIC3.63□□□□□ -1.83
COL9A1P20849 U4.6-201ENST00000621618 127 ntBASIC3.63□□□□□ -1.83
COL9A1P20849 MAPK10-322ENST00000641485 4530 ntBASIC3.63□□□□□ -1.83
COL9A1P20849 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL9A1P20849 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL9A1P20849 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.63□□□□□ -1.83
COL9A1P20849 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL9A1P20849 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.62□□□□□ -1.83
COL9A1P20849 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL9A1P20849 Y_RNA.168-201ENST00000363740 102 ntBASIC3.62□□□□□ -1.83
COL9A1P20849 Y_RNA.354-201ENST00000365448 111 ntBASIC3.62□□□□□ -1.83
COL9A1P20849 Y_RNA.448-201ENST00000384185 108 ntBASIC3.62□□□□□ -1.83
COL9A1P20849 MIR591-201ENST00000385290 95 ntBASIC3.62□□□□□ -1.83
COL9A1P20849 MIR1262-201ENST00000408276 93 ntBASIC3.62□□□□□ -1.83
COL9A1P20849 RNU6-519P-201ENST00000410590 108 ntBASIC3.62□□□□□ -1.83
COL9A1P20849 snoU13.15-201ENST00000459407 104 ntBASIC3.62□□□□□ -1.83
COL9A1P20849 AC108210.2-201ENST00000503681 201 ntBASIC3.62□□□□□ -1.83
COL9A1P20849 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
COL9A1P20849 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
COL9A1P20849 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.62□□□□□ -1.83
COL9A1P20849 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL9A1P20849 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL9A1P20849 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.61□□□□□ -1.83
COL9A1P20849 RNU6-1067P-201ENST00000384752 107 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 174 ms