Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC004965.1-201ENST00000413033 213 ntBASIC1.45□□□□□ -2.18
MSH3P20585 MLLT10P1-201ENST00000418346 262 ntBASIC1.45□□□□□ -2.18
MSH3P20585 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.45□□□□□ -2.18
MSH3P20585 PGBD4P5-201ENST00000445958 426 ntBASIC1.45□□□□□ -2.18
MSH3P20585 SNORD11-201ENST00000459124 84 ntBASIC1.45□□□□□ -2.18
MSH3P20585 NDUFA4P2-201ENST00000489989 244 ntBASIC1.45□□□□□ -2.18
MSH3P20585 RNU6-388P-201ENST00000517012 105 ntBASIC1.45□□□□□ -2.18
MSH3P20585 RNU6-389P-201ENST00000517048 105 ntBASIC1.45□□□□□ -2.18
MSH3P20585 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.45□□□□□ -2.18
MSH3P20585 MIR4769-201ENST00000584126 77 ntBASIC1.45□□□□□ -2.18
MSH3P20585 AL021707.8-201ENST00000609428 183 ntBASIC1.45□□□□□ -2.18
MSH3P20585 Y_RNA.552-201ENST00000384665 112 ntBASIC1.44□□□□□ -2.18
MSH3P20585 MIR660-201ENST00000385235 97 ntBASIC1.44□□□□□ -2.18
MSH3P20585 SNRPGP13-201ENST00000442212 177 ntBASIC1.44□□□□□ -2.18
MSH3P20585 RNU6-1116P-201ENST00000517269 99 ntBASIC1.44□□□□□ -2.18
MSH3P20585 JPX_2.1-201ENST00000614161 69 ntBASIC1.44□□□□□ -2.18
MSH3P20585 AC078938.1-201ENST00000620993 318 ntBASIC1.44□□□□□ -2.18
MSH3P20585 Y_RNA.140-201ENST00000363474 103 ntBASIC1.43□□□□□ -2.18
MSH3P20585 RNU6-131P-201ENST00000391144 107 ntBASIC1.43□□□□□ -2.18
MSH3P20585 RNU6-955P-201ENST00000410497 104 ntBASIC1.43□□□□□ -2.18
MSH3P20585 RNU1-92P-201ENST00000517017 135 ntBASIC1.43□□□□□ -2.18
MSH3P20585 Y_RNA.714-201ENST00000517065 90 ntBASIC1.43□□□□□ -2.18
MSH3P20585 AC087685.1-201ENST00000587507 141 ntBASIC1.43□□□□□ -2.18
MSH3P20585 AC027279.3-201ENST00000625055 122 ntBASIC1.43□□□□□ -2.18
MSH3P20585 SNORD3E-202ENST00000627253 216 ntBASIC1.43□□□□□ -2.18
MSH3P20585 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
MSH3P20585 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
MSH3P20585 Y_RNA.199-201ENST00000364014 102 ntBASIC1.42□□□□□ -2.18
MSH3P20585 snoU2_19.4-201ENST00000364329 80 ntBASIC1.42□□□□□ -2.18
MSH3P20585 Y_RNA.229-201ENST00000364347 113 ntBASIC1.42□□□□□ -2.18
MSH3P20585 SNORD50B-201ENST00000364995 70 ntBASIC1.42□□□□□ -2.18
MSH3P20585 RNU6-381P-201ENST00000391259 108 ntBASIC1.42□□□□□ -2.18
MSH3P20585 MIR1298-201ENST00000408783 112 ntBASIC1.42□□□□□ -2.18
MSH3P20585 AC108667.1-201ENST00000428618 249 ntBASIC1.42□□□□□ -2.18
MSH3P20585 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.42□□□□□ -2.18
MSH3P20585 snoU13.9-201ENST00000458927 103 ntBASIC1.42□□□□□ -2.18
MSH3P20585 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.42□□□□□ -2.18
MSH3P20585 CYCTP-201ENST00000504253 315 ntBASIC1.42□□□□□ -2.18
MSH3P20585 AC114811.1-201ENST00000507207 168 ntBASIC1.42□□□□□ -2.18
MSH3P20585 RNU7-12P-201ENST00000516030 62 ntBASIC1.42□□□□□ -2.18
MSH3P20585 RNY3P16-201ENST00000516338 101 ntBASIC1.42□□□□□ -2.18
MSH3P20585 AC130289.1-201ENST00000577321 73 ntBASIC1.42□□□□□ -2.18
MSH3P20585 AC015688.6-201ENST00000577737 104 ntBASIC1.42□□□□□ -2.18
MSH3P20585 AC120024.3-201ENST00000603167 156 ntBASIC1.42□□□□□ -2.18
MSH3P20585 AL512598.1-201ENST00000610158 273 ntBASIC1.42□□□□□ -2.18
MSH3P20585 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.42□□□□□ -2.18
MSH3P20585 uc_338.4-201ENST00000616635 176 ntBASIC1.42□□□□□ -2.18
MSH3P20585 ZNF209P-201ENST00000593450 2304 ntBASIC1.41□□□□□ -2.18
MSH3P20585 U8.1-201ENST00000362843 134 ntBASIC1.41□□□□□ -2.18
MSH3P20585 RNU6-833P-201ENST00000363486 107 ntBASIC1.41□□□□□ -2.18
MSH3P20585 Y_RNA.200-201ENST00000364018 102 ntBASIC1.41□□□□□ -2.18
MSH3P20585 RNU6-163P-201ENST00000384396 106 ntBASIC1.41□□□□□ -2.18
MSH3P20585 Y_RNA.515-201ENST00000384535 112 ntBASIC1.41□□□□□ -2.18
MSH3P20585 RNU4-62P-201ENST00000410125 130 ntBASIC1.41□□□□□ -2.18
MSH3P20585 PIGPP3-201ENST00000425307 415 ntBASIC1.41□□□□□ -2.18
MSH3P20585 SCARNA8-201ENST00000515924 131 ntBASIC1.41□□□□□ -2.18
MSH3P20585 SNORD45.4-201ENST00000516629 73 ntBASIC1.41□□□□□ -2.18
MSH3P20585 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.41□□□□□ -2.18
MSH3P20585 AC008507.4-201ENST00000585464 127 ntBASIC1.41□□□□□ -2.18
MSH3P20585 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.41□□□□□ -2.18
MSH3P20585 AL161722.3-201ENST00000605789 2983 ntBASIC1.41□□□□□ -2.18
MSH3P20585 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
MSH3P20585 MIR302D-201ENST00000362275 68 ntBASIC1.4□□□□□ -2.19
MSH3P20585 RNU6-1084P-201ENST00000362498 107 ntBASIC1.4□□□□□ -2.19
MSH3P20585 Y_RNA.83-201ENST00000363005 113 ntBASIC1.4□□□□□ -2.19
MSH3P20585 Y_RNA.257-201ENST00000364596 102 ntBASIC1.4□□□□□ -2.19
MSH3P20585 snoU2-30.1-201ENST00000365012 70 ntBASIC1.4□□□□□ -2.19
MSH3P20585 Y_RNA.308-201ENST00000365043 101 ntBASIC1.4□□□□□ -2.19
MSH3P20585 RNU4-17P-201ENST00000365598 141 ntBASIC1.4□□□□□ -2.19
MSH3P20585 MIR616-201ENST00000385293 97 ntBASIC1.4□□□□□ -2.19
MSH3P20585 MIR891A-201ENST00000401237 79 ntBASIC1.4□□□□□ -2.19
MSH3P20585 HSPE1P24-201ENST00000450782 238 ntBASIC1.4□□□□□ -2.19
MSH3P20585 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.4□□□□□ -2.19
MSH3P20585 AC093850.1-201ENST00000454121 251 ntBASIC1.4□□□□□ -2.19
MSH3P20585 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.4□□□□□ -2.19
MSH3P20585 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.4□□□□□ -2.19
MSH3P20585 RNU6-1007P-201ENST00000516586 107 ntBASIC1.4□□□□□ -2.19
MSH3P20585 SUMO2P16-201ENST00000519475 264 ntBASIC1.4□□□□□ -2.19
MSH3P20585 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
MSH3P20585 MIR4778-201ENST00000577635 80 ntBASIC1.4□□□□□ -2.19
MSH3P20585 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.4□□□□□ -2.19
MSH3P20585 AL049861.1-201ENST00000603130 150 ntBASIC1.4□□□□□ -2.19
MSH3P20585 AP000942.3-201ENST00000603702 160 ntBASIC1.4□□□□□ -2.19
MSH3P20585 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
MSH3P20585 ICE2P2-201ENST00000483823 2787 ntBASIC1.39□□□□□ -2.19
MSH3P20585 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
MSH3P20585 MIR411-201ENST00000362239 96 ntBASIC1.39□□□□□ -2.19
MSH3P20585 RNU6-923P-201ENST00000364753 107 ntBASIC1.39□□□□□ -2.19
MSH3P20585 RNU1-78P-201ENST00000391248 165 ntBASIC1.39□□□□□ -2.19
MSH3P20585 RNU6-493P-201ENST00000391321 108 ntBASIC1.39□□□□□ -2.19
MSH3P20585 RNU6-847P-201ENST00000411115 108 ntBASIC1.39□□□□□ -2.19
MSH3P20585 AC023449.1-201ENST00000454464 154 ntBASIC1.39□□□□□ -2.19
MSH3P20585 AC245047.8-201ENST00000456455 284 ntBASIC1.39□□□□□ -2.19
MSH3P20585 RN7SKP164-201ENST00000516138 266 ntBASIC1.39□□□□□ -2.19
MSH3P20585 RNU6-453P-201ENST00000516819 85 ntBASIC1.39□□□□□ -2.19
MSH3P20585 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.39□□□□□ -2.19
MSH3P20585 MIR3671-201ENST00000580455 88 ntBASIC1.39□□□□□ -2.19
MSH3P20585 MIR4308-201ENST00000580634 81 ntBASIC1.39□□□□□ -2.19
MSH3P20585 MIR4422-201ENST00000581938 83 ntBASIC1.39□□□□□ -2.19
MSH3P20585 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 209.6 ms