Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 RPS27P1-201ENST00000450552 247 ntBASIC1.16□□□□□ -2.22
HOXC4P09017 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.16□□□□□ -2.22
HOXC4P09017 RNU6-1291P-201ENST00000516591 104 ntBASIC1.16□□□□□ -2.22
HOXC4P09017 RNU1-142P-201ENST00000516682 145 ntBASIC1.16□□□□□ -2.22
HOXC4P09017 AC022559.1-201ENST00000520905 205 ntBASIC1.16□□□□□ -2.22
HOXC4P09017 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.16□□□□□ -2.22
HOXC4P09017 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.16□□□□□ -2.22
HOXC4P09017 POLR3GP1-201ENST00000594073 261 ntBASIC1.16□□□□□ -2.22
HOXC4P09017 AP003357.1-201ENST00000604497 148 ntBASIC1.16□□□□□ -2.22
HOXC4P09017 AC073349.3-201ENST00000617616 186 ntBASIC1.16□□□□□ -2.22
HOXC4P09017 MIR548AY-201ENST00000617669 107 ntBASIC1.16□□□□□ -2.22
HOXC4P09017 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
HOXC4P09017 AC091895.1-201ENST00000624494 256 ntBASIC1.16□□□□□ -2.22
HOXC4P09017 MIR6079-201ENST00000635807 62 ntBASIC1.16□□□□□ -2.22
HOXC4P09017 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
HOXC4P09017 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.15□□□□□ -2.22
HOXC4P09017 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.15□□□□□ -2.23
HOXC4P09017 snoU2_19.4-201ENST00000364329 80 ntBASIC1.15□□□□□ -2.23
HOXC4P09017 RNU6-1019P-201ENST00000364424 107 ntBASIC1.15□□□□□ -2.23
HOXC4P09017 Y_RNA.267-201ENST00000364679 109 ntBASIC1.15□□□□□ -2.23
HOXC4P09017 SNORA4.2-201ENST00000365313 147 ntBASIC1.15□□□□□ -2.23
HOXC4P09017 RNU6-1080P-201ENST00000383982 107 ntBASIC1.15□□□□□ -2.23
HOXC4P09017 RNU6-1323P-201ENST00000384025 107 ntBASIC1.15□□□□□ -2.23
HOXC4P09017 SNORD26-201ENST00000384147 75 ntBASIC1.15□□□□□ -2.23
HOXC4P09017 Y_RNA.515-201ENST00000384535 112 ntBASIC1.15□□□□□ -2.23
HOXC4P09017 RNU6-493P-201ENST00000391321 108 ntBASIC1.15□□□□□ -2.23
HOXC4P09017 SNORA36B-201ENST00000410438 131 ntBASIC1.15□□□□□ -2.23
HOXC4P09017 AC069257.2-201ENST00000441819 155 ntBASIC1.15□□□□□ -2.23
HOXC4P09017 RPS26P45-201ENST00000471748 340 ntBASIC1.15□□□□□ -2.23
HOXC4P09017 AC099513.1-201ENST00000490423 301 ntBASIC1.15□□□□□ -2.23
HOXC4P09017 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.15□□□□□ -2.23
HOXC4P09017 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.15□□□□□ -2.23
HOXC4P09017 RNU6-1278P-201ENST00000516130 107 ntBASIC1.15□□□□□ -2.23
HOXC4P09017 RNU6-1096P-201ENST00000517089 102 ntBASIC1.15□□□□□ -2.23
HOXC4P09017 AC100767.1-201ENST00000528178 123 ntBASIC1.15□□□□□ -2.23
HOXC4P09017 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.15□□□□□ -2.23
HOXC4P09017 MIR4308-201ENST00000580634 81 ntBASIC1.15□□□□□ -2.23
HOXC4P09017 AL121890.5-201ENST00000620848 304 ntBASIC1.15□□□□□ -2.23
HOXC4P09017 MIR8063-201ENST00000621930 81 ntBASIC1.15□□□□□ -2.23
HOXC4P09017 AC018630.2-201ENST00000534866 2403 ntBASIC1.15□□□□□ -2.23
HOXC4P09017 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
HOXC4P09017 MIR411-201ENST00000362239 96 ntBASIC1.14□□□□□ -2.23
HOXC4P09017 MIR302D-201ENST00000362275 68 ntBASIC1.14□□□□□ -2.23
HOXC4P09017 Y_RNA.24-201ENST00000362508 103 ntBASIC1.14□□□□□ -2.23
HOXC4P09017 Y_RNA.83-201ENST00000363005 113 ntBASIC1.14□□□□□ -2.23
HOXC4P09017 RNU6-899P-201ENST00000363947 107 ntBASIC1.14□□□□□ -2.23
HOXC4P09017 RNU6-200P-201ENST00000364743 107 ntBASIC1.14□□□□□ -2.23
HOXC4P09017 Y_RNA.297-201ENST00000364950 91 ntBASIC1.14□□□□□ -2.23
HOXC4P09017 Y_RNA.304-201ENST00000365011 112 ntBASIC1.14□□□□□ -2.23
HOXC4P09017 RNU6-847P-201ENST00000411115 108 ntBASIC1.14□□□□□ -2.23
HOXC4P09017 AC010154.1-201ENST00000425857 269 ntBASIC1.14□□□□□ -2.23
HOXC4P09017 MTND5P15-201ENST00000434246 349 ntBASIC1.14□□□□□ -2.23
HOXC4P09017 AC233266.1-201ENST00000454518 96 ntBASIC1.14□□□□□ -2.23
HOXC4P09017 RPL23AP54-201ENST00000495129 419 ntBASIC1.14□□□□□ -2.23
HOXC4P09017 SCARNA8-201ENST00000515924 131 ntBASIC1.14□□□□□ -2.23
HOXC4P09017 SNORA31.10-201ENST00000516482 106 ntBASIC1.14□□□□□ -2.23
HOXC4P09017 AC011604.1-201ENST00000545978 196 ntBASIC1.14□□□□□ -2.23
HOXC4P09017 AC127455.1-201ENST00000565496 145 ntBASIC1.14□□□□□ -2.23
HOXC4P09017 AC242852.1-201ENST00000612151 96 ntBASIC1.14□□□□□ -2.23
HOXC4P09017 AC244015.1-201ENST00000622301 99 ntBASIC1.14□□□□□ -2.23
HOXC4P09017 AC100821.1-201ENST00000523153 2479 ntBASIC1.14□□□□□ -2.23
HOXC4P09017 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
HOXC4P09017 MIR26B-201ENST00000362251 77 ntBASIC1.13□□□□□ -2.23
HOXC4P09017 SNORA1B-201ENST00000362535 133 ntBASIC1.13□□□□□ -2.23
HOXC4P09017 RNU6-1205P-201ENST00000363625 106 ntBASIC1.13□□□□□ -2.23
HOXC4P09017 SNORD1A-201ENST00000364968 72 ntBASIC1.13□□□□□ -2.23
HOXC4P09017 SNORA25.9-201ENST00000365087 128 ntBASIC1.13□□□□□ -2.23
HOXC4P09017 MIR499A-201ENST00000384903 122 ntBASIC1.13□□□□□ -2.23
HOXC4P09017 MIR626-201ENST00000385032 94 ntBASIC1.13□□□□□ -2.23
HOXC4P09017 SNORA12.1-201ENST00000390873 148 ntBASIC1.13□□□□□ -2.23
HOXC4P09017 RNU6-918P-201ENST00000391219 106 ntBASIC1.13□□□□□ -2.23
HOXC4P09017 AC079140.2-201ENST00000506193 142 ntBASIC1.13□□□□□ -2.23
HOXC4P09017 RNU6-453P-201ENST00000516819 85 ntBASIC1.13□□□□□ -2.23
HOXC4P09017 RNA5SP437-201ENST00000517249 129 ntBASIC1.13□□□□□ -2.23
HOXC4P09017 MIR6504-201ENST00000613520 61 ntBASIC1.13□□□□□ -2.23
HOXC4P09017 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.13□□□□□ -2.23
HOXC4P09017 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
HOXC4P09017 Y_RNA.226-201ENST00000364337 114 ntBASIC1.12□□□□□ -2.23
HOXC4P09017 SNORA63D-201ENST00000364359 132 ntBASIC1.12□□□□□ -2.23
HOXC4P09017 Y_RNA.262-201ENST00000364641 102 ntBASIC1.12□□□□□ -2.23
HOXC4P09017 RNU6-969P-201ENST00000383900 105 ntBASIC1.12□□□□□ -2.23
HOXC4P09017 SNORA72-201ENST00000384339 132 ntBASIC1.12□□□□□ -2.23
HOXC4P09017 MT-TT-201ENST00000387460 66 ntBASIC1.12□□□□□ -2.23
HOXC4P09017 Y_RNA.621-201ENST00000411065 96 ntBASIC1.12□□□□□ -2.23
HOXC4P09017 RNA5SP247-201ENST00000411181 105 ntBASIC1.12□□□□□ -2.23
HOXC4P09017 COX6CP10-201ENST00000416832 224 ntBASIC1.12□□□□□ -2.23
HOXC4P09017 AC027119.1-201ENST00000440877 241 ntBASIC1.12□□□□□ -2.23
HOXC4P09017 RNU6-437P-201ENST00000459408 95 ntBASIC1.12□□□□□ -2.23
HOXC4P09017 RNA5SP102-201ENST00000516865 106 ntBASIC1.12□□□□□ -2.23
HOXC4P09017 RNU6-341P-201ENST00000516973 96 ntBASIC1.12□□□□□ -2.23
HOXC4P09017 AC024995.1-201ENST00000523014 93 ntBASIC1.12□□□□□ -2.23
HOXC4P09017 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.12□□□□□ -2.23
HOXC4P09017 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
HOXC4P09017 MIR3668-201ENST00000582138 75 ntBASIC1.12□□□□□ -2.23
HOXC4P09017 MIR4295-201ENST00000585286 85 ntBASIC1.12□□□□□ -2.23
HOXC4P09017 Y_RNA.203-201ENST00000364106 102 ntBASIC1.11□□□□□ -2.23
HOXC4P09017 Y_RNA.796-201ENST00000364268 102 ntBASIC1.11□□□□□ -2.23
HOXC4P09017 RNU4-41P-201ENST00000364426 143 ntBASIC1.11□□□□□ -2.23
HOXC4P09017 Y_RNA.799-201ENST00000364992 102 ntBASIC1.11□□□□□ -2.23
HOXC4P09017 MIR515-2-201ENST00000384883 83 ntBASIC1.11□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 243.9 ms