Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 Y_RNA.168-201ENST00000363740 102 ntBASIC0.45□□□□□ -2.34
CLDN3O15551 RNU6-268P-201ENST00000364174 107 ntBASIC0.45□□□□□ -2.34
CLDN3O15551 RNY1P8-201ENST00000383970 114 ntBASIC0.45□□□□□ -2.34
CLDN3O15551 MTCO2P33-201ENST00000402100 465 ntBASIC0.45□□□□□ -2.34
CLDN3O15551 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.45□□□□□ -2.34
CLDN3O15551 RNU7-181P-201ENST00000517234 74 ntBASIC0.45□□□□□ -2.34
CLDN3O15551 AC127455.1-201ENST00000565496 145 ntBASIC0.45□□□□□ -2.34
CLDN3O15551 AC015726.2-201ENST00000620112 122 ntBASIC0.45□□□□□ -2.34
CLDN3O15551 AC139792.2-201ENST00000624218 587 ntBASIC0.45□□□□□ -2.34
CLDN3O15551 Y_RNA.462-201ENST00000384268 102 ntBASIC0.44□□□□□ -2.34
CLDN3O15551 MIR5188-201ENST00000583467 113 ntBASIC0.44□□□□□ -2.34
CLDN3O15551 MIR548AY-201ENST00000617669 107 ntBASIC0.44□□□□□ -2.34
CLDN3O15551 MTND4LP32-201ENST00000636111 270 ntBASIC0.44□□□□□ -2.34
CLDN3O15551 Y_RNA.376-201ENST00000365638 108 ntBASIC0.43□□□□□ -2.34
CLDN3O15551 RNU7-110P-201ENST00000516891 62 ntBASIC0.43□□□□□ -2.34
CLDN3O15551 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.43□□□□□ -2.34
CLDN3O15551 MIR548AO-201ENST00000579992 96 ntBASIC0.43□□□□□ -2.34
CLDN3O15551 AP000753.3-201ENST00000604083 169 ntBASIC0.43□□□□□ -2.34
CLDN3O15551 Y_RNA.772-201ENST00000606692 102 ntBASIC0.43□□□□□ -2.34
CLDN3O15551 AC243829.6-201ENST00000612652 106 ntBASIC0.43□□□□□ -2.34
CLDN3O15551 MIR4272-201ENST00000635924 64 ntBASIC0.43□□□□□ -2.34
CLDN3O15551 Y_RNA.259-201ENST00000364619 101 ntBASIC0.42□□□□□ -2.34
CLDN3O15551 SNORA1.2-201ENST00000365189 134 ntBASIC0.42□□□□□ -2.34
CLDN3O15551 Y_RNA.387-201ENST00000383918 102 ntBASIC0.42□□□□□ -2.34
CLDN3O15551 RNU6-1040P-201ENST00000383974 107 ntBASIC0.42□□□□□ -2.34
CLDN3O15551 Y_RNA.428-201ENST00000384078 102 ntBASIC0.42□□□□□ -2.34
CLDN3O15551 Y_RNA.537-201ENST00000384626 109 ntBASIC0.42□□□□□ -2.34
CLDN3O15551 MIR520F-201ENST00000384824 87 ntBASIC0.42□□□□□ -2.34
CLDN3O15551 MIR140-201ENST00000385282 100 ntBASIC0.42□□□□□ -2.34
CLDN3O15551 SCARNA8-201ENST00000515924 131 ntBASIC0.42□□□□□ -2.34
CLDN3O15551 RNU4-57P-201ENST00000515980 135 ntBASIC0.42□□□□□ -2.34
CLDN3O15551 RNU6-977P-201ENST00000516411 103 ntBASIC0.42□□□□□ -2.34
CLDN3O15551 MIR2681-201ENST00000581814 105 ntBASIC0.42□□□□□ -2.34
CLDN3O15551 AC008507.4-201ENST00000585464 127 ntBASIC0.42□□□□□ -2.34
CLDN3O15551 AL080274.1-201ENST00000605565 220 ntBASIC0.42□□□□□ -2.34
CLDN3O15551 AC011373.1-201ENST00000607270 237 ntBASIC0.42□□□□□ -2.34
CLDN3O15551 MIR7111-201ENST00000619751 72 ntBASIC0.42□□□□□ -2.34
CLDN3O15551 Y_RNA.458-201ENST00000384240 102 ntBASIC0.41□□□□□ -2.34
CLDN3O15551 Y_RNA.463-201ENST00000384271 102 ntBASIC0.41□□□□□ -2.34
CLDN3O15551 SNORD116-29-201ENST00000384516 83 ntBASIC0.41□□□□□ -2.34
CLDN3O15551 RNU6-342P-201ENST00000384521 104 ntBASIC0.41□□□□□ -2.34
CLDN3O15551 MIR573-201ENST00000384964 99 ntBASIC0.41□□□□□ -2.34
CLDN3O15551 MIR520H-201ENST00000385126 88 ntBASIC0.41□□□□□ -2.34
CLDN3O15551 RNU6-205P-201ENST00000390858 107 ntBASIC0.41□□□□□ -2.34
CLDN3O15551 RNY4P36-201ENST00000391116 96 ntBASIC0.41□□□□□ -2.34
CLDN3O15551 AC098614.3-201ENST00000438957 440 ntBASIC0.41□□□□□ -2.34
CLDN3O15551 RN7SKP12-201ENST00000516275 143 ntBASIC0.41□□□□□ -2.34
CLDN3O15551 SNORD116.3-201ENST00000517176 78 ntBASIC0.41□□□□□ -2.34
CLDN3O15551 RPL23AP91-201ENST00000569211 455 ntBASIC0.41□□□□□ -2.34
CLDN3O15551 MIR3145-201ENST00000580727 82 ntBASIC0.41□□□□□ -2.34
CLDN3O15551 MIR4791-201ENST00000607666 84 ntBASIC0.41□□□□□ -2.34
CLDN3O15551 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC0.41□□□□□ -2.34
CLDN3O15551 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.41□□□□□ -2.34
CLDN3O15551 MTND1P7-201ENST00000632801 297 ntBASIC0.41□□□□□ -2.34
CLDN3O15551 RNU6-369P-201ENST00000362515 102 ntBASIC0.4□□□□□ -2.35
CLDN3O15551 SNORD18A-201ENST00000363753 72 ntBASIC0.4□□□□□ -2.35
CLDN3O15551 RNU6-580P-201ENST00000365159 107 ntBASIC0.4□□□□□ -2.35
CLDN3O15551 SNORA50A-201ENST00000384225 134 ntBASIC0.4□□□□□ -2.35
CLDN3O15551 MIR216A-201ENST00000385063 110 ntBASIC0.4□□□□□ -2.35
CLDN3O15551 MIR1278-201ENST00000408753 81 ntBASIC0.4□□□□□ -2.35
CLDN3O15551 SNORA36B-201ENST00000410438 131 ntBASIC0.4□□□□□ -2.35
CLDN3O15551 RNU6-177P-201ENST00000411257 104 ntBASIC0.4□□□□□ -2.35
CLDN3O15551 RNU6-437P-201ENST00000459408 95 ntBASIC0.4□□□□□ -2.35
CLDN3O15551 RNU6-1007P-201ENST00000516586 107 ntBASIC0.4□□□□□ -2.35
CLDN3O15551 Y_RNA.718-201ENST00000517110 102 ntBASIC0.4□□□□□ -2.35
CLDN3O15551 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.4□□□□□ -2.35
CLDN3O15551 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.39□□□□□ -2.35
CLDN3O15551 AL589743.1-201ENST00000551932 2712 ntBASIC0.39□□□□□ -2.35
CLDN3O15551 RNU6-674P-201ENST00000363831 107 ntBASIC0.39□□□□□ -2.35
CLDN3O15551 RNU6-934P-201ENST00000365154 107 ntBASIC0.39□□□□□ -2.35
CLDN3O15551 MT-TN-201ENST00000387400 73 ntBASIC0.39□□□□□ -2.35
CLDN3O15551 SNORD72-201ENST00000390994 80 ntBASIC0.39□□□□□ -2.35
CLDN3O15551 Y_RNA.619-201ENST00000410951 90 ntBASIC0.39□□□□□ -2.35
CLDN3O15551 AC138393.2-201ENST00000414742 246 ntBASIC0.39□□□□□ -2.35
CLDN3O15551 AC244023.1-201ENST00000426884 112 ntBASIC0.39□□□□□ -2.35
CLDN3O15551 MTCO2P12-201ENST00000427426 682 ntBASIC0.39□□□□□ -2.35
CLDN3O15551 snoU13.21-201ENST00000459368 105 ntBASIC0.39□□□□□ -2.35
CLDN3O15551 RNU6-277P-201ENST00000516272 106 ntBASIC0.39□□□□□ -2.35
CLDN3O15551 SNORA20.3-201ENST00000516880 132 ntBASIC0.39□□□□□ -2.35
CLDN3O15551 AC242498.1-201ENST00000604134 111 ntBASIC0.39□□□□□ -2.35
CLDN3O15551 AC006441.5-201ENST00000612680 209 ntBASIC0.39□□□□□ -2.35
CLDN3O15551 AC243994.1-201ENST00000618627 109 ntBASIC0.39□□□□□ -2.35
CLDN3O15551 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.39□□□□□ -2.35
CLDN3O15551 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.38□□□□□ -2.35
CLDN3O15551 VTRNA1-3-201ENST00000365645 89 ntBASIC0.38□□□□□ -2.35
CLDN3O15551 Y_RNA.384-201ENST00000383909 102 ntBASIC0.38□□□□□ -2.35
CLDN3O15551 SNORD63-201ENST00000384262 68 ntBASIC0.38□□□□□ -2.35
CLDN3O15551 Y_RNA.551-201ENST00000384661 102 ntBASIC0.38□□□□□ -2.35
CLDN3O15551 AL603910.2-201ENST00000407268 136 ntBASIC0.38□□□□□ -2.35
CLDN3O15551 RNU6-847P-201ENST00000411115 108 ntBASIC0.38□□□□□ -2.35
CLDN3O15551 SNORD83.1-201ENST00000411362 77 ntBASIC0.38□□□□□ -2.35
CLDN3O15551 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.38□□□□□ -2.35
CLDN3O15551 RNU2-13P-201ENST00000515909 113 ntBASIC0.38□□□□□ -2.35
CLDN3O15551 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.38□□□□□ -2.35
CLDN3O15551 MIR4771-2-201ENST00000577758 74 ntBASIC0.38□□□□□ -2.35
CLDN3O15551 MIR4771-1-201ENST00000582617 74 ntBASIC0.38□□□□□ -2.35
CLDN3O15551 AL121655.1-201ENST00000605811 308 ntBASIC0.38□□□□□ -2.35
CLDN3O15551 MIR377-201ENST00000362145 69 ntBASIC0.37□□□□□ -2.35
CLDN3O15551 Y_RNA.112-201ENST00000363250 102 ntBASIC0.37□□□□□ -2.35
CLDN3O15551 Y_RNA.142-201ENST00000363491 102 ntBASIC0.37□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 307.7 ms