Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 MT-TR-201ENST00000387439 65 ntBASIC1.68□□□□□ -2.14
SMARCAL1Q9NZC9 MT-TT-201ENST00000387460 66 ntBASIC1.68□□□□□ -2.14
SMARCAL1Q9NZC9 MIR526A2-201ENST00000390198 65 ntBASIC1.68□□□□□ -2.14
SMARCAL1Q9NZC9 RNU6-440P-201ENST00000390882 105 ntBASIC1.68□□□□□ -2.14
SMARCAL1Q9NZC9 RNU6-918P-201ENST00000391219 106 ntBASIC1.68□□□□□ -2.14
SMARCAL1Q9NZC9 Y_RNA.793-201ENST00000411222 111 ntBASIC1.68□□□□□ -2.14
SMARCAL1Q9NZC9 AL138752.1-201ENST00000452964 351 ntBASIC1.68□□□□□ -2.14
SMARCAL1Q9NZC9 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.68□□□□□ -2.14
SMARCAL1Q9NZC9 AC245047.8-201ENST00000456455 284 ntBASIC1.68□□□□□ -2.14
SMARCAL1Q9NZC9 RNA5SP57-201ENST00000459463 123 ntBASIC1.68□□□□□ -2.14
SMARCAL1Q9NZC9 SCARNA8-201ENST00000515924 131 ntBASIC1.68□□□□□ -2.14
SMARCAL1Q9NZC9 RNU2-56P-201ENST00000516826 190 ntBASIC1.68□□□□□ -2.14
SMARCAL1Q9NZC9 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.68□□□□□ -2.14
SMARCAL1Q9NZC9 AC015712.3-201ENST00000559380 164 ntBASIC1.68□□□□□ -2.14
SMARCAL1Q9NZC9 RPL23AP91-201ENST00000569211 455 ntBASIC1.68□□□□□ -2.14
SMARCAL1Q9NZC9 Z83818.1-201ENST00000603584 150 ntBASIC1.68□□□□□ -2.14
SMARCAL1Q9NZC9 AC004792.1-201ENST00000614523 137 ntBASIC1.68□□□□□ -2.14
SMARCAL1Q9NZC9 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.68□□□□□ -2.14
SMARCAL1Q9NZC9 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.68□□□□□ -2.14
SMARCAL1Q9NZC9 WWP1P1-201ENST00000466609 2769 ntBASIC1.67□□□□□ -2.14
SMARCAL1Q9NZC9 RNU6-1209P-201ENST00000363655 107 ntBASIC1.67□□□□□ -2.14
SMARCAL1Q9NZC9 RNU6-1020P-201ENST00000363684 107 ntBASIC1.67□□□□□ -2.14
SMARCAL1Q9NZC9 Y_RNA.796-201ENST00000364268 102 ntBASIC1.67□□□□□ -2.14
SMARCAL1Q9NZC9 Y_RNA.229-201ENST00000364347 113 ntBASIC1.67□□□□□ -2.14
SMARCAL1Q9NZC9 Y_RNA.799-201ENST00000364992 102 ntBASIC1.67□□□□□ -2.14
SMARCAL1Q9NZC9 RNU6-381P-201ENST00000391259 108 ntBASIC1.67□□□□□ -2.14
SMARCAL1Q9NZC9 SNORA26.9-201ENST00000391322 122 ntBASIC1.67□□□□□ -2.14
SMARCAL1Q9NZC9 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.67□□□□□ -2.14
SMARCAL1Q9NZC9 MLLT10P1-201ENST00000418346 262 ntBASIC1.67□□□□□ -2.14
SMARCAL1Q9NZC9 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.67□□□□□ -2.14
SMARCAL1Q9NZC9 Z98949.2-201ENST00000440996 144 ntBASIC1.67□□□□□ -2.14
SMARCAL1Q9NZC9 AC069257.2-201ENST00000441819 155 ntBASIC1.67□□□□□ -2.14
SMARCAL1Q9NZC9 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.67□□□□□ -2.14
SMARCAL1Q9NZC9 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1.67□□□□□ -2.14
SMARCAL1Q9NZC9 SNORA25.15-201ENST00000516487 89 ntBASIC1.67□□□□□ -2.14
SMARCAL1Q9NZC9 SNORA31.17-201ENST00000516953 127 ntBASIC1.67□□□□□ -2.14
SMARCAL1Q9NZC9 AP002004.2-201ENST00000531656 154 ntBASIC1.67□□□□□ -2.14
SMARCAL1Q9NZC9 AP002392.1-201ENST00000537692 208 ntBASIC1.67□□□□□ -2.14
SMARCAL1Q9NZC9 MIR4713-201ENST00000582691 75 ntBASIC1.67□□□□□ -2.14
SMARCAL1Q9NZC9 RNU2-4P-201ENST00000606190 192 ntBASIC1.67□□□□□ -2.14
SMARCAL1Q9NZC9 AL591926.4-201ENST00000616895 298 ntBASIC1.67□□□□□ -2.14
SMARCAL1Q9NZC9 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.67□□□□□ -2.14
SMARCAL1Q9NZC9 Y_RNA.29-201ENST00000362570 113 ntBASIC1.66□□□□□ -2.14
SMARCAL1Q9NZC9 Y_RNA.253-201ENST00000364562 112 ntBASIC1.66□□□□□ -2.14
SMARCAL1Q9NZC9 Y_RNA.265-201ENST00000364677 108 ntBASIC1.66□□□□□ -2.14
SMARCAL1Q9NZC9 Y_RNA.785-201ENST00000384290 109 ntBASIC1.66□□□□□ -2.14
SMARCAL1Q9NZC9 AL627390.1-201ENST00000396055 340 ntBASIC1.66□□□□□ -2.14
SMARCAL1Q9NZC9 CYCSP49-201ENST00000420810 319 ntBASIC1.66□□□□□ -2.14
SMARCAL1Q9NZC9 STAG3L5P-204ENST00000443759 179 ntBASIC1.66□□□□□ -2.14
SMARCAL1Q9NZC9 HMGN1P7-201ENST00000491722 313 ntBASIC1.66□□□□□ -2.14
SMARCAL1Q9NZC9 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.66□□□□□ -2.14
SMARCAL1Q9NZC9 RNU6-548P-201ENST00000517083 115 ntBASIC1.66□□□□□ -2.14
SMARCAL1Q9NZC9 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.66□□□□□ -2.14
SMARCAL1Q9NZC9 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.66□□□□□ -2.14
SMARCAL1Q9NZC9 MIR502-201ENST00000606349 86 ntBASIC1.66□□□□□ -2.14
SMARCAL1Q9NZC9 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.65□□□□□ -2.14
SMARCAL1Q9NZC9 MIR126-201ENST00000362291 85 ntBASIC1.65□□□□□ -2.15
SMARCAL1Q9NZC9 SNORD68-201ENST00000363214 84 ntBASIC1.65□□□□□ -2.15
SMARCAL1Q9NZC9 Y_RNA.238-201ENST00000364441 102 ntBASIC1.65□□□□□ -2.15
SMARCAL1Q9NZC9 MIR562-201ENST00000384894 95 ntBASIC1.65□□□□□ -2.15
SMARCAL1Q9NZC9 SNORA12.1-201ENST00000390873 148 ntBASIC1.65□□□□□ -2.15
SMARCAL1Q9NZC9 MIR1323-201ENST00000408090 73 ntBASIC1.65□□□□□ -2.15
SMARCAL1Q9NZC9 RNU2-64P-201ENST00000411315 191 ntBASIC1.65□□□□□ -2.15
SMARCAL1Q9NZC9 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.65□□□□□ -2.15
SMARCAL1Q9NZC9 PIGPP3-201ENST00000425307 415 ntBASIC1.65□□□□□ -2.15
SMARCAL1Q9NZC9 SNRPGP10-201ENST00000432323 225 ntBASIC1.65□□□□□ -2.15
SMARCAL1Q9NZC9 RNU6-1007P-201ENST00000516586 107 ntBASIC1.65□□□□□ -2.15
SMARCAL1Q9NZC9 AL358944.1-201ENST00000528537 144 ntBASIC1.65□□□□□ -2.15
SMARCAL1Q9NZC9 AL049861.1-201ENST00000603130 150 ntBASIC1.65□□□□□ -2.15
SMARCAL1Q9NZC9 ICE2P2-201ENST00000483823 2787 ntBASIC1.64□□□□□ -2.15
SMARCAL1Q9NZC9 Y_RNA.7-201ENST00000362352 102 ntBASIC1.64□□□□□ -2.15
SMARCAL1Q9NZC9 Y_RNA.571-201ENST00000384753 98 ntBASIC1.64□□□□□ -2.15
SMARCAL1Q9NZC9 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
SMARCAL1Q9NZC9 MIR764-201ENST00000390811 85 ntBASIC1.64□□□□□ -2.15
SMARCAL1Q9NZC9 Y_RNA.587-201ENST00000391210 103 ntBASIC1.64□□□□□ -2.15
SMARCAL1Q9NZC9 RN7SKP51-201ENST00000410781 304 ntBASIC1.64□□□□□ -2.15
SMARCAL1Q9NZC9 AC008834.1-201ENST00000511612 175 ntBASIC1.64□□□□□ -2.15
SMARCAL1Q9NZC9 Y_RNA.700-201ENST00000516806 100 ntBASIC1.64□□□□□ -2.15
SMARCAL1Q9NZC9 RNU6-182P-201ENST00000516970 105 ntBASIC1.64□□□□□ -2.15
SMARCAL1Q9NZC9 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.64□□□□□ -2.15
SMARCAL1Q9NZC9 MIR4285-201ENST00000581001 85 ntBASIC1.64□□□□□ -2.15
SMARCAL1Q9NZC9 JPX_2.1-201ENST00000614161 69 ntBASIC1.64□□□□□ -2.15
SMARCAL1Q9NZC9 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.64□□□□□ -2.15
SMARCAL1Q9NZC9 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
SMARCAL1Q9NZC9 Y_RNA.233-201ENST00000364407 101 ntBASIC1.63□□□□□ -2.15
SMARCAL1Q9NZC9 RNU4-70P-201ENST00000384579 139 ntBASIC1.63□□□□□ -2.15
SMARCAL1Q9NZC9 AL606845.1-201ENST00000404881 255 ntBASIC1.63□□□□□ -2.15
SMARCAL1Q9NZC9 RN7SKP200-201ENST00000410564 320 ntBASIC1.63□□□□□ -2.15
SMARCAL1Q9NZC9 SNORD11-201ENST00000459124 84 ntBASIC1.63□□□□□ -2.15
SMARCAL1Q9NZC9 RNU7-34P-201ENST00000459394 64 ntBASIC1.63□□□□□ -2.15
SMARCAL1Q9NZC9 NDUFA4P2-201ENST00000489989 244 ntBASIC1.63□□□□□ -2.15
SMARCAL1Q9NZC9 RN7SKP164-201ENST00000516138 266 ntBASIC1.63□□□□□ -2.15
SMARCAL1Q9NZC9 RNU6-1219P-201ENST00000516143 112 ntBASIC1.63□□□□□ -2.15
SMARCAL1Q9NZC9 RNU6-561P-201ENST00000516222 102 ntBASIC1.63□□□□□ -2.15
SMARCAL1Q9NZC9 RNA5SP61-201ENST00000516453 100 ntBASIC1.63□□□□□ -2.15
SMARCAL1Q9NZC9 RNU6-861P-201ENST00000516745 106 ntBASIC1.63□□□□□ -2.15
SMARCAL1Q9NZC9 MIR5688-201ENST00000580619 83 ntBASIC1.63□□□□□ -2.15
SMARCAL1Q9NZC9 MIR2681-201ENST00000581814 105 ntBASIC1.63□□□□□ -2.15
SMARCAL1Q9NZC9 AL021707.8-201ENST00000609428 183 ntBASIC1.63□□□□□ -2.15
SMARCAL1Q9NZC9 AL353997.5-201ENST00000618886 171 ntBASIC1.63□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 199 ms