Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RNU6-437P-201ENST00000459408 95 ntBASIC1.3□□□□□ -2.2
NKX3-1Q99801 AC092991.1-201ENST00000477176 376 ntBASIC1.3□□□□□ -2.2
NKX3-1Q99801 AC079140.2-201ENST00000506193 142 ntBASIC1.3□□□□□ -2.2
NKX3-1Q99801 RNU1-92P-201ENST00000517017 135 ntBASIC1.3□□□□□ -2.2
NKX3-1Q99801 MIR5692C2-201ENST00000577959 77 ntBASIC1.3□□□□□ -2.2
NKX3-1Q99801 MIR4422-201ENST00000581938 83 ntBASIC1.3□□□□□ -2.2
NKX3-1Q99801 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
NKX3-1Q99801 MIR335-201ENST00000362173 94 ntBASIC1.29□□□□□ -2.2
NKX3-1Q99801 Y_RNA.44-201ENST00000362676 108 ntBASIC1.29□□□□□ -2.2
NKX3-1Q99801 U8.5-201ENST00000364528 136 ntBASIC1.29□□□□□ -2.2
NKX3-1Q99801 RNU6-211P-201ENST00000384047 107 ntBASIC1.29□□□□□ -2.2
NKX3-1Q99801 RNU6-163P-201ENST00000384396 106 ntBASIC1.29□□□□□ -2.2
NKX3-1Q99801 Y_RNA.518-201ENST00000384552 113 ntBASIC1.29□□□□□ -2.2
NKX3-1Q99801 Y_RNA.572-201ENST00000384757 98 ntBASIC1.29□□□□□ -2.2
NKX3-1Q99801 SNORA17.3-201ENST00000391159 129 ntBASIC1.29□□□□□ -2.2
NKX3-1Q99801 RNU6-955P-201ENST00000410497 104 ntBASIC1.29□□□□□ -2.2
NKX3-1Q99801 RPS27P16-201ENST00000425758 201 ntBASIC1.29□□□□□ -2.2
NKX3-1Q99801 AC027119.1-201ENST00000440877 241 ntBASIC1.29□□□□□ -2.2
NKX3-1Q99801 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.29□□□□□ -2.2
NKX3-1Q99801 SNORD127-201ENST00000458892 86 ntBASIC1.29□□□□□ -2.2
NKX3-1Q99801 NDUFA4P2-201ENST00000489989 244 ntBASIC1.29□□□□□ -2.2
NKX3-1Q99801 RNU6-917P-201ENST00000516294 104 ntBASIC1.29□□□□□ -2.2
NKX3-1Q99801 RPL23AP91-201ENST00000569211 455 ntBASIC1.29□□□□□ -2.2
NKX3-1Q99801 MIR4303-201ENST00000581299 66 ntBASIC1.29□□□□□ -2.2
NKX3-1Q99801 MIR4503-201ENST00000582187 83 ntBASIC1.29□□□□□ -2.2
NKX3-1Q99801 MIR4762-201ENST00000585261 75 ntBASIC1.29□□□□□ -2.2
NKX3-1Q99801 AC120024.3-201ENST00000603167 156 ntBASIC1.29□□□□□ -2.2
NKX3-1Q99801 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
NKX3-1Q99801 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
NKX3-1Q99801 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.28□□□□□ -2.2
NKX3-1Q99801 RNU6-1205P-201ENST00000363625 106 ntBASIC1.28□□□□□ -2.2
NKX3-1Q99801 RNU1-42P-201ENST00000364033 160 ntBASIC1.28□□□□□ -2.2
NKX3-1Q99801 MIR526A1-201ENST00000384897 85 ntBASIC1.28□□□□□ -2.2
NKX3-1Q99801 SNORA67.6-201ENST00000391093 99 ntBASIC1.28□□□□□ -2.2
NKX3-1Q99801 AL603910.2-201ENST00000407268 136 ntBASIC1.28□□□□□ -2.2
NKX3-1Q99801 AL354695.1-201ENST00000427935 228 ntBASIC1.28□□□□□ -2.2
NKX3-1Q99801 MTND4LP30-201ENST00000454092 297 ntBASIC1.28□□□□□ -2.2
NKX3-1Q99801 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.28□□□□□ -2.2
NKX3-1Q99801 U2.14-201ENST00000615943 113 ntBASIC1.28□□□□□ -2.2
NKX3-1Q99801 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.21
NKX3-1Q99801 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
NKX3-1Q99801 RNU6-674P-201ENST00000363831 107 ntBASIC1.27□□□□□ -2.21
NKX3-1Q99801 Y_RNA.277-201ENST00000364754 102 ntBASIC1.27□□□□□ -2.21
NKX3-1Q99801 Y_RNA.293-201ENST00000364908 93 ntBASIC1.27□□□□□ -2.21
NKX3-1Q99801 RNU6-969P-201ENST00000383900 105 ntBASIC1.27□□□□□ -2.21
NKX3-1Q99801 AL603825.1-201ENST00000438481 80 ntBASIC1.27□□□□□ -2.21
NKX3-1Q99801 AC245517.4-201ENST00000448601 281 ntBASIC1.27□□□□□ -2.21
NKX3-1Q99801 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.27□□□□□ -2.21
NKX3-1Q99801 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.27□□□□□ -2.21
NKX3-1Q99801 MTND1P19-201ENST00000511780 315 ntBASIC1.27□□□□□ -2.21
NKX3-1Q99801 Y_RNA.668-201ENST00000516233 93 ntBASIC1.27□□□□□ -2.21
NKX3-1Q99801 SNORD45.4-201ENST00000516629 73 ntBASIC1.27□□□□□ -2.21
NKX3-1Q99801 DNAJC19P9-201ENST00000555084 351 ntBASIC1.27□□□□□ -2.21
NKX3-1Q99801 MIR4255-201ENST00000579351 72 ntBASIC1.27□□□□□ -2.21
NKX3-1Q99801 MIR3937-201ENST00000580135 106 ntBASIC1.27□□□□□ -2.21
NKX3-1Q99801 RNU6-1084P-201ENST00000362498 107 ntBASIC1.26□□□□□ -2.21
NKX3-1Q99801 RNU6-199P-201ENST00000362954 107 ntBASIC1.26□□□□□ -2.21
NKX3-1Q99801 RNU6-833P-201ENST00000363486 107 ntBASIC1.26□□□□□ -2.21
NKX3-1Q99801 Y_RNA.477-201ENST00000384352 108 ntBASIC1.26□□□□□ -2.21
NKX3-1Q99801 MIR517C-201ENST00000385103 95 ntBASIC1.26□□□□□ -2.21
NKX3-1Q99801 SNORA67.5-201ENST00000391036 107 ntBASIC1.26□□□□□ -2.21
NKX3-1Q99801 RNU6-131P-201ENST00000391144 107 ntBASIC1.26□□□□□ -2.21
NKX3-1Q99801 MIR891A-201ENST00000401237 79 ntBASIC1.26□□□□□ -2.21
NKX3-1Q99801 RNU4-62P-201ENST00000410125 130 ntBASIC1.26□□□□□ -2.21
NKX3-1Q99801 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC1.26□□□□□ -2.21
NKX3-1Q99801 RPL30P13-201ENST00000418873 348 ntBASIC1.26□□□□□ -2.21
NKX3-1Q99801 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.26□□□□□ -2.21
NKX3-1Q99801 CYCTP-201ENST00000504253 315 ntBASIC1.26□□□□□ -2.21
NKX3-1Q99801 RNA5SP445-201ENST00000515889 115 ntBASIC1.26□□□□□ -2.21
NKX3-1Q99801 RNU6-922P-201ENST00000516753 99 ntBASIC1.26□□□□□ -2.21
NKX3-1Q99801 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.26□□□□□ -2.21
NKX3-1Q99801 AL645939.4-201ENST00000604495 135 ntBASIC1.26□□□□□ -2.21
NKX3-1Q99801 AL512598.1-201ENST00000610158 273 ntBASIC1.26□□□□□ -2.21
NKX3-1Q99801 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.26□□□□□ -2.21
NKX3-1Q99801 U6.104-201ENST00000637979 90 ntBASIC1.26□□□□□ -2.21
NKX3-1Q99801 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
NKX3-1Q99801 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.26□□□□□ -2.21
NKX3-1Q99801 Y_RNA.14-201ENST00000362415 103 ntBASIC1.25□□□□□ -2.21
NKX3-1Q99801 Y_RNA.54-201ENST00000362766 105 ntBASIC1.25□□□□□ -2.21
NKX3-1Q99801 Y_RNA.122-201ENST00000363331 96 ntBASIC1.25□□□□□ -2.21
NKX3-1Q99801 Y_RNA.288-201ENST00000364854 92 ntBASIC1.25□□□□□ -2.21
NKX3-1Q99801 MIR1298-201ENST00000408783 112 ntBASIC1.25□□□□□ -2.21
NKX3-1Q99801 BTF3P4-201ENST00000418852 495 ntBASIC1.25□□□□□ -2.21
NKX3-1Q99801 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.25□□□□□ -2.21
NKX3-1Q99801 SNORD11-201ENST00000459124 84 ntBASIC1.25□□□□□ -2.21
NKX3-1Q99801 RNU6-1132P-201ENST00000459214 107 ntBASIC1.25□□□□□ -2.21
NKX3-1Q99801 Y_RNA.680-201ENST00000516441 93 ntBASIC1.25□□□□□ -2.21
NKX3-1Q99801 RNU6-902P-201ENST00000517212 91 ntBASIC1.25□□□□□ -2.21
NKX3-1Q99801 AP001485.1-201ENST00000604799 199 ntBASIC1.25□□□□□ -2.21
NKX3-1Q99801 AL162730.1-201ENST00000605734 292 ntBASIC1.25□□□□□ -2.21
NKX3-1Q99801 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.25□□□□□ -2.21
NKX3-1Q99801 AC027279.3-201ENST00000625055 122 ntBASIC1.25□□□□□ -2.21
NKX3-1Q99801 Y_RNA.24-201ENST00000362508 103 ntBASIC1.24□□□□□ -2.21
NKX3-1Q99801 Y_RNA.76-201ENST00000362931 109 ntBASIC1.24□□□□□ -2.21
NKX3-1Q99801 Y_RNA.193-201ENST00000363979 102 ntBASIC1.24□□□□□ -2.21
NKX3-1Q99801 RNU6-144P-201ENST00000383951 107 ntBASIC1.24□□□□□ -2.21
NKX3-1Q99801 MIR516B2-201ENST00000385190 85 ntBASIC1.24□□□□□ -2.21
NKX3-1Q99801 MIR653-201ENST00000385279 96 ntBASIC1.24□□□□□ -2.21
NKX3-1Q99801 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.24□□□□□ -2.21
NKX3-1Q99801 SNORD72-201ENST00000390994 80 ntBASIC1.24□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 181.1 ms