Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.81□□□□□ -2.12
CCDC28AQ8IWP9 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.81□□□□□ -2.12
CCDC28AQ8IWP9 MIR3198-2-201ENST00000577868 80 ntBASIC1.81□□□□□ -2.12
CCDC28AQ8IWP9 RNU6-1084P-201ENST00000362498 107 ntBASIC1.8□□□□□ -2.12
CCDC28AQ8IWP9 Y_RNA.83-201ENST00000363005 113 ntBASIC1.8□□□□□ -2.12
CCDC28AQ8IWP9 Y_RNA.229-201ENST00000364347 113 ntBASIC1.8□□□□□ -2.12
CCDC28AQ8IWP9 Y_RNA.242-201ENST00000364473 110 ntBASIC1.8□□□□□ -2.12
CCDC28AQ8IWP9 RNU6-163P-201ENST00000384396 106 ntBASIC1.8□□□□□ -2.12
CCDC28AQ8IWP9 NDUFA4P2-201ENST00000489989 244 ntBASIC1.8□□□□□ -2.12
CCDC28AQ8IWP9 RNU7-12P-201ENST00000516030 62 ntBASIC1.8□□□□□ -2.12
CCDC28AQ8IWP9 MIR4319-201ENST00000577285 85 ntBASIC1.8□□□□□ -2.12
CCDC28AQ8IWP9 SNORA77B-201ENST00000578179 125 ntBASIC1.8□□□□□ -2.12
CCDC28AQ8IWP9 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
CCDC28AQ8IWP9 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.79□□□□□ -2.12
CCDC28AQ8IWP9 Y_RNA.257-201ENST00000364596 102 ntBASIC1.79□□□□□ -2.12
CCDC28AQ8IWP9 Y_RNA.308-201ENST00000365043 101 ntBASIC1.79□□□□□ -2.12
CCDC28AQ8IWP9 SNORA67.3-201ENST00000384366 140 ntBASIC1.79□□□□□ -2.12
CCDC28AQ8IWP9 Y_RNA.572-201ENST00000384757 98 ntBASIC1.79□□□□□ -2.12
CCDC28AQ8IWP9 RNU6-381P-201ENST00000391259 108 ntBASIC1.79□□□□□ -2.12
CCDC28AQ8IWP9 MIR891A-201ENST00000401237 79 ntBASIC1.79□□□□□ -2.12
CCDC28AQ8IWP9 AL359511.1-201ENST00000402970 211 ntBASIC1.79□□□□□ -2.12
CCDC28AQ8IWP9 RNA5SP489-201ENST00000410986 109 ntBASIC1.79□□□□□ -2.12
CCDC28AQ8IWP9 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC1.79□□□□□ -2.12
CCDC28AQ8IWP9 HMGN2P32-201ENST00000444648 269 ntBASIC1.79□□□□□ -2.12
CCDC28AQ8IWP9 snoU13.9-201ENST00000458927 103 ntBASIC1.79□□□□□ -2.12
CCDC28AQ8IWP9 RN7SKP132-201ENST00000516001 208 ntBASIC1.79□□□□□ -2.12
CCDC28AQ8IWP9 RN7SKP164-201ENST00000516138 266 ntBASIC1.79□□□□□ -2.12
CCDC28AQ8IWP9 EIF4BP1-201ENST00000554881 351 ntBASIC1.79□□□□□ -2.12
CCDC28AQ8IWP9 MIR5002-201ENST00000584713 97 ntBASIC1.79□□□□□ -2.12
CCDC28AQ8IWP9 uc_338.4-201ENST00000616635 176 ntBASIC1.79□□□□□ -2.12
CCDC28AQ8IWP9 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.79□□□□□ -2.12
CCDC28AQ8IWP9 MIR1291-201ENST00000627649 87 ntBASIC1.79□□□□□ -2.12
CCDC28AQ8IWP9 MIR411-201ENST00000362239 96 ntBASIC1.78□□□□□ -2.12
CCDC28AQ8IWP9 RNU6-833P-201ENST00000363486 107 ntBASIC1.78□□□□□ -2.12
CCDC28AQ8IWP9 SNORA80A-201ENST00000363922 136 ntBASIC1.78□□□□□ -2.12
CCDC28AQ8IWP9 MIR513A1-201ENST00000385138 129 ntBASIC1.78□□□□□ -2.12
CCDC28AQ8IWP9 MIR616-201ENST00000385293 97 ntBASIC1.78□□□□□ -2.12
CCDC28AQ8IWP9 MIR802-201ENST00000390235 94 ntBASIC1.78□□□□□ -2.12
CCDC28AQ8IWP9 PIGPP3-201ENST00000425307 415 ntBASIC1.78□□□□□ -2.12
CCDC28AQ8IWP9 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.78□□□□□ -2.12
CCDC28AQ8IWP9 AC114811.1-201ENST00000507207 168 ntBASIC1.78□□□□□ -2.12
CCDC28AQ8IWP9 SNORD45.4-201ENST00000516629 73 ntBASIC1.78□□□□□ -2.12
CCDC28AQ8IWP9 RNU6-1116P-201ENST00000517269 99 ntBASIC1.78□□□□□ -2.12
CCDC28AQ8IWP9 AC130289.1-201ENST00000577321 73 ntBASIC1.78□□□□□ -2.12
CCDC28AQ8IWP9 MIR3671-201ENST00000580455 88 ntBASIC1.78□□□□□ -2.12
CCDC28AQ8IWP9 AL049861.1-201ENST00000603130 150 ntBASIC1.78□□□□□ -2.12
CCDC28AQ8IWP9 Z83818.1-201ENST00000603584 150 ntBASIC1.78□□□□□ -2.12
CCDC28AQ8IWP9 AL391903.3-201ENST00000612158 163 ntBASIC1.78□□□□□ -2.12
CCDC28AQ8IWP9 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
CCDC28AQ8IWP9 ICE2P2-201ENST00000483823 2787 ntBASIC1.77□□□□□ -2.13
CCDC28AQ8IWP9 AC062016.1-201ENST00000355719 319 ntBASIC1.77□□□□□ -2.13
CCDC28AQ8IWP9 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
CCDC28AQ8IWP9 RNU6-103P-201ENST00000363686 107 ntBASIC1.77□□□□□ -2.13
CCDC28AQ8IWP9 SNORD14E-201ENST00000364009 85 ntBASIC1.77□□□□□ -2.13
CCDC28AQ8IWP9 snoU2_19.4-201ENST00000364329 80 ntBASIC1.77□□□□□ -2.13
CCDC28AQ8IWP9 SNORD50B-201ENST00000364995 70 ntBASIC1.77□□□□□ -2.13
CCDC28AQ8IWP9 RNU6-493P-201ENST00000391321 108 ntBASIC1.77□□□□□ -2.13
CCDC28AQ8IWP9 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.77□□□□□ -2.13
CCDC28AQ8IWP9 AC026436.1-201ENST00000510537 270 ntBASIC1.77□□□□□ -2.13
CCDC28AQ8IWP9 AC008834.1-201ENST00000511612 175 ntBASIC1.77□□□□□ -2.13
CCDC28AQ8IWP9 RNA5SP320-201ENST00000516263 124 ntBASIC1.77□□□□□ -2.13
CCDC28AQ8IWP9 RNY3P16-201ENST00000516338 101 ntBASIC1.77□□□□□ -2.13
CCDC28AQ8IWP9 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
CCDC28AQ8IWP9 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC1.77□□□□□ -2.13
CCDC28AQ8IWP9 DEFB122-202ENST00000569013 197 ntBASIC1.77□□□□□ -2.13
CCDC28AQ8IWP9 MIR4778-201ENST00000577635 80 ntBASIC1.77□□□□□ -2.13
CCDC28AQ8IWP9 AC008507.4-201ENST00000585464 127 ntBASIC1.77□□□□□ -2.13
CCDC28AQ8IWP9 MIR6817-201ENST00000615588 66 ntBASIC1.77□□□□□ -2.13
CCDC28AQ8IWP9 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC1.77□□□□□ -2.13
CCDC28AQ8IWP9 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC1.77□□□□□ -2.13
CCDC28AQ8IWP9 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
CCDC28AQ8IWP9 RNU6-923P-201ENST00000364753 107 ntBASIC1.76□□□□□ -2.13
CCDC28AQ8IWP9 Y_RNA.336-201ENST00000365307 109 ntBASIC1.76□□□□□ -2.13
CCDC28AQ8IWP9 RNY3P5-201ENST00000384127 102 ntBASIC1.76□□□□□ -2.13
CCDC28AQ8IWP9 NDUFB4P4-201ENST00000404822 243 ntBASIC1.76□□□□□ -2.13
CCDC28AQ8IWP9 AL445685.2-201ENST00000422551 342 ntBASIC1.76□□□□□ -2.13
CCDC28AQ8IWP9 AC245047.8-201ENST00000456455 284 ntBASIC1.76□□□□□ -2.13
CCDC28AQ8IWP9 AC005908.1-201ENST00000468701 347 ntBASIC1.76□□□□□ -2.13
CCDC28AQ8IWP9 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.76□□□□□ -2.13
CCDC28AQ8IWP9 SUMO2P16-201ENST00000519475 264 ntBASIC1.76□□□□□ -2.13
CCDC28AQ8IWP9 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.76□□□□□ -2.13
CCDC28AQ8IWP9 AC015688.6-201ENST00000577737 104 ntBASIC1.76□□□□□ -2.13
CCDC28AQ8IWP9 MIR6766-201ENST00000622641 72 ntBASIC1.76□□□□□ -2.13
CCDC28AQ8IWP9 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.75□□□□□ -2.13
CCDC28AQ8IWP9 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.75□□□□□ -2.13
CCDC28AQ8IWP9 Y_RNA.7-201ENST00000362352 102 ntBASIC1.75□□□□□ -2.13
CCDC28AQ8IWP9 Y_RNA.274-201ENST00000364714 101 ntBASIC1.75□□□□□ -2.13
CCDC28AQ8IWP9 RNU6-200P-201ENST00000364743 107 ntBASIC1.75□□□□□ -2.13
CCDC28AQ8IWP9 RNA5SP259-201ENST00000365541 109 ntBASIC1.75□□□□□ -2.13
CCDC28AQ8IWP9 RNU6-442P-201ENST00000383968 104 ntBASIC1.75□□□□□ -2.13
CCDC28AQ8IWP9 Y_RNA.587-201ENST00000391210 103 ntBASIC1.75□□□□□ -2.13
CCDC28AQ8IWP9 HSPE1P24-201ENST00000450782 238 ntBASIC1.75□□□□□ -2.13
CCDC28AQ8IWP9 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.75□□□□□ -2.13
CCDC28AQ8IWP9 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1.75□□□□□ -2.13
CCDC28AQ8IWP9 SNORD77.4-201ENST00000516158 81 ntBASIC1.75□□□□□ -2.13
CCDC28AQ8IWP9 RNA5SP148-201ENST00000516527 94 ntBASIC1.75□□□□□ -2.13
CCDC28AQ8IWP9 RNU6-126P-201ENST00000516685 103 ntBASIC1.75□□□□□ -2.13
CCDC28AQ8IWP9 MIR4662B-201ENST00000579498 81 ntBASIC1.75□□□□□ -2.13
CCDC28AQ8IWP9 MIR5007-201ENST00000583098 95 ntBASIC1.75□□□□□ -2.13
CCDC28AQ8IWP9 AC103810.6-201ENST00000606708 136 ntBASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 255.9 ms