Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RNA5SP264-201ENST00000363115 107 ntBASIC0.73□□□□□ -2.29
SHMT2P34897 Y_RNA.303-201ENST00000364998 94 ntBASIC0.73□□□□□ -2.29
SHMT2P34897 Y_RNA.310-201ENST00000365063 113 ntBASIC0.73□□□□□ -2.29
SHMT2P34897 MIR136-201ENST00000385207 82 ntBASIC0.73□□□□□ -2.29
SHMT2P34897 MLLT10P1-201ENST00000418346 262 ntBASIC0.73□□□□□ -2.29
SHMT2P34897 Y_RNA.632-201ENST00000459189 102 ntBASIC0.73□□□□□ -2.29
SHMT2P34897 SNORD19B-201ENST00000459623 84 ntBASIC0.73□□□□□ -2.29
SHMT2P34897 AC091951.2-201ENST00000500762 203 ntBASIC0.73□□□□□ -2.29
SHMT2P34897 FGF7P4-201ENST00000509595 295 ntBASIC0.73□□□□□ -2.29
SHMT2P34897 RNU7-41P-201ENST00000515917 61 ntBASIC0.73□□□□□ -2.29
SHMT2P34897 SNORD116.3-201ENST00000517176 78 ntBASIC0.73□□□□□ -2.29
SHMT2P34897 MIR151B-201ENST00000584249 96 ntBASIC0.73□□□□□ -2.29
SHMT2P34897 AC104985.2-201ENST00000620598 500 ntBASIC0.73□□□□□ -2.29
SHMT2P34897 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.73□□□□□ -2.29
SHMT2P34897 SNORD81.1-201ENST00000363064 77 ntBASIC0.72□□□□□ -2.29
SHMT2P34897 Y_RNA.187-201ENST00000363918 113 ntBASIC0.72□□□□□ -2.29
SHMT2P34897 SNORD50B-201ENST00000364995 70 ntBASIC0.72□□□□□ -2.29
SHMT2P34897 snoU2-30.1-201ENST00000365012 70 ntBASIC0.72□□□□□ -2.29
SHMT2P34897 SNORD14.1-201ENST00000365609 90 ntBASIC0.72□□□□□ -2.29
SHMT2P34897 RNU6-1323P-201ENST00000384025 107 ntBASIC0.72□□□□□ -2.29
SHMT2P34897 MIR15B-201ENST00000385045 98 ntBASIC0.72□□□□□ -2.29
SHMT2P34897 RNU6-131P-201ENST00000391144 107 ntBASIC0.72□□□□□ -2.29
SHMT2P34897 AL590004.1-201ENST00000405321 300 ntBASIC0.72□□□□□ -2.29
SHMT2P34897 MIR1185-1-201ENST00000408598 86 ntBASIC0.72□□□□□ -2.29
SHMT2P34897 MIR548J-201ENST00000408833 112 ntBASIC0.72□□□□□ -2.29
SHMT2P34897 RNU6-710P-201ENST00000410424 105 ntBASIC0.72□□□□□ -2.29
SHMT2P34897 SNRPGP10-201ENST00000432323 225 ntBASIC0.72□□□□□ -2.29
SHMT2P34897 HMGN2P32-201ENST00000444648 269 ntBASIC0.72□□□□□ -2.29
SHMT2P34897 U8.19-201ENST00000459095 133 ntBASIC0.72□□□□□ -2.29
SHMT2P34897 RNU4-77P-201ENST00000516692 156 ntBASIC0.72□□□□□ -2.29
SHMT2P34897 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC0.72□□□□□ -2.29
SHMT2P34897 MIR103A2-201ENST00000362154 78 ntBASIC0.71□□□□□ -2.3
SHMT2P34897 Y_RNA.331-201ENST00000365267 102 ntBASIC0.71□□□□□ -2.3
SHMT2P34897 Y_RNA.368-201ENST00000365547 113 ntBASIC0.71□□□□□ -2.3
SHMT2P34897 MIR942-201ENST00000401111 86 ntBASIC0.71□□□□□ -2.3
SHMT2P34897 AL390729.2-201ENST00000416137 156 ntBASIC0.71□□□□□ -2.3
SHMT2P34897 MTCO2P27-201ENST00000420740 428 ntBASIC0.71□□□□□ -2.3
SHMT2P34897 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC0.71□□□□□ -2.3
SHMT2P34897 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.71□□□□□ -2.3
SHMT2P34897 RN7SKP164-201ENST00000516138 266 ntBASIC0.71□□□□□ -2.3
SHMT2P34897 ACA64.5-201ENST00000516207 127 ntBASIC0.71□□□□□ -2.3
SHMT2P34897 RNU6-197P-201ENST00000516680 100 ntBASIC0.71□□□□□ -2.3
SHMT2P34897 SNORA18.7-201ENST00000516910 131 ntBASIC0.71□□□□□ -2.3
SHMT2P34897 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.71□□□□□ -2.3
SHMT2P34897 MIR5188-201ENST00000583467 113 ntBASIC0.71□□□□□ -2.3
SHMT2P34897 DEFB117-201ENST00000602356 141 ntBASIC0.71□□□□□ -2.3
SHMT2P34897 AL078603.1-201ENST00000603824 313 ntBASIC0.71□□□□□ -2.3
SHMT2P34897 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.71□□□□□ -2.3
SHMT2P34897 MIR6835-201ENST00000621552 64 ntBASIC0.71□□□□□ -2.3
SHMT2P34897 RNU6-1084P-201ENST00000362498 107 ntBASIC0.7□□□□□ -2.3
SHMT2P34897 SNORA25.3-201ENST00000363205 127 ntBASIC0.7□□□□□ -2.3
SHMT2P34897 Y_RNA.116-201ENST00000363292 103 ntBASIC0.7□□□□□ -2.3
SHMT2P34897 RNA5SP48-201ENST00000363969 126 ntBASIC0.7□□□□□ -2.3
SHMT2P34897 Y_RNA.341-201ENST00000365341 102 ntBASIC0.7□□□□□ -2.3
SHMT2P34897 Y_RNA.456-201ENST00000384232 111 ntBASIC0.7□□□□□ -2.3
SHMT2P34897 Y_RNA.458-201ENST00000384240 102 ntBASIC0.7□□□□□ -2.3
SHMT2P34897 Y_RNA.462-201ENST00000384268 102 ntBASIC0.7□□□□□ -2.3
SHMT2P34897 MIR520C-201ENST00000385005 87 ntBASIC0.7□□□□□ -2.3
SHMT2P34897 RPS3AP1-201ENST00000413190 320 ntBASIC0.7□□□□□ -2.3
SHMT2P34897 AF228730.4-201ENST00000421457 183 ntBASIC0.7□□□□□ -2.3
SHMT2P34897 SNORD123-201ENST00000459473 70 ntBASIC0.7□□□□□ -2.3
SHMT2P34897 RNA5SP255-201ENST00000516370 107 ntBASIC0.7□□□□□ -2.3
SHMT2P34897 RNU6-875P-201ENST00000516488 106 ntBASIC0.7□□□□□ -2.3
SHMT2P34897 RNU7-43P-201ENST00000516554 64 ntBASIC0.7□□□□□ -2.3
SHMT2P34897 AC093027.1-201ENST00000546698 429 ntBASIC0.7□□□□□ -2.3
SHMT2P34897 MIR4764-201ENST00000580680 88 ntBASIC0.7□□□□□ -2.3
SHMT2P34897 AC092447.9-201ENST00000603395 144 ntBASIC0.7□□□□□ -2.3
SHMT2P34897 SNORD58B-201ENST00000607313 66 ntBASIC0.7□□□□□ -2.3
SHMT2P34897 Y_RNA.252-201ENST00000364556 101 ntBASIC0.69□□□□□ -2.3
SHMT2P34897 RNU1-115P-201ENST00000365329 160 ntBASIC0.69□□□□□ -2.3
SHMT2P34897 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
SHMT2P34897 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.69□□□□□ -2.3
SHMT2P34897 RNU7-116P-201ENST00000516940 62 ntBASIC0.69□□□□□ -2.3
SHMT2P34897 AC024405.2-202ENST00000532731 184 ntBASIC0.69□□□□□ -2.3
SHMT2P34897 AC127455.1-201ENST00000565496 145 ntBASIC0.69□□□□□ -2.3
SHMT2P34897 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.69□□□□□ -2.3
SHMT2P34897 AP003357.1-201ENST00000604497 148 ntBASIC0.69□□□□□ -2.3
SHMT2P34897 AL121655.1-201ENST00000605811 308 ntBASIC0.69□□□□□ -2.3
SHMT2P34897 Y_RNA.772-201ENST00000606692 102 ntBASIC0.69□□□□□ -2.3
SHMT2P34897 AC106800.4-201ENST00000614905 153 ntBASIC0.69□□□□□ -2.3
SHMT2P34897 SEPT14P17-201ENST00000617978 177 ntBASIC0.69□□□□□ -2.3
SHMT2P34897 AL138825.1-201ENST00000618587 192 ntBASIC0.69□□□□□ -2.3
SHMT2P34897 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
SHMT2P34897 Y_RNA.5-201ENST00000362334 102 ntBASIC0.68□□□□□ -2.3
SHMT2P34897 Y_RNA.39-201ENST00000362620 98 ntBASIC0.68□□□□□ -2.3
SHMT2P34897 Y_RNA.529-201ENST00000384586 119 ntBASIC0.68□□□□□ -2.3
SHMT2P34897 MIR518E-201ENST00000385252 88 ntBASIC0.68□□□□□ -2.3
SHMT2P34897 MIR100-201ENST00000385259 80 ntBASIC0.68□□□□□ -2.3
SHMT2P34897 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.68□□□□□ -2.3
SHMT2P34897 MTND1P14-201ENST00000427400 950 ntBASIC0.68□□□□□ -2.3
SHMT2P34897 RNA5SP220-201ENST00000516298 104 ntBASIC0.68□□□□□ -2.3
SHMT2P34897 SNORA40.14-201ENST00000516543 86 ntBASIC0.68□□□□□ -2.3
SHMT2P34897 AC133485.1-201ENST00000567176 124 ntBASIC0.68□□□□□ -2.3
SHMT2P34897 AC138907.6-201ENST00000568401 126 ntBASIC0.68□□□□□ -2.3
SHMT2P34897 MIR3145-201ENST00000580727 82 ntBASIC0.68□□□□□ -2.3
SHMT2P34897 AC131055.1-201ENST00000584626 316 ntBASIC0.68□□□□□ -2.3
SHMT2P34897 POLR3GP1-201ENST00000594073 261 ntBASIC0.68□□□□□ -2.3
SHMT2P34897 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.68□□□□□ -2.3
SHMT2P34897 AL606534.2-204ENST00000635008 178 ntBASIC0.68□□□□□ -2.3
SHMT2P34897 Y_RNA.203-201ENST00000364106 102 ntBASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 202.5 ms