Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL9A1P20849 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL9A1P20849 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL9A1P20849 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
COL9A1P20849 SNORD115-37-201ENST00000363768 82 ntBASIC3.8□□□□□ -1.8
COL9A1P20849 Y_RNA.247-201ENST00000364500 92 ntBASIC3.8□□□□□ -1.8
COL9A1P20849 SNORA44-201ENST00000384584 132 ntBASIC3.8□□□□□ -1.8
COL9A1P20849 RNU6-160P-201ENST00000384591 107 ntBASIC3.8□□□□□ -1.8
COL9A1P20849 MIR592-201ENST00000384959 97 ntBASIC3.8□□□□□ -1.8
COL9A1P20849 RNU7-34P-201ENST00000459394 64 ntBASIC3.8□□□□□ -1.8
COL9A1P20849 UBL5P1-201ENST00000507979 193 ntBASIC3.8□□□□□ -1.8
COL9A1P20849 RNA5SP208-201ENST00000516156 78 ntBASIC3.8□□□□□ -1.8
COL9A1P20849 RNU7-181P-201ENST00000517234 74 ntBASIC3.8□□□□□ -1.8
COL9A1P20849 MIR5004-201ENST00000579078 107 ntBASIC3.8□□□□□ -1.8
COL9A1P20849 SNORA62.6-201ENST00000606322 83 ntBASIC3.8□□□□□ -1.8
COL9A1P20849 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC3.8□□□□□ -1.8
COL9A1P20849 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL9A1P20849 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
COL9A1P20849 TNPO1P3-201ENST00000436471 2662 ntBASIC3.79□□□□□ -1.8
COL9A1P20849 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
COL9A1P20849 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL9A1P20849 RNU6-315P-201ENST00000362666 107 ntBASIC3.79□□□□□ -1.8
COL9A1P20849 RNU6-1244P-201ENST00000363614 108 ntBASIC3.79□□□□□ -1.8
COL9A1P20849 RNA5SP139-201ENST00000364340 117 ntBASIC3.79□□□□□ -1.8
COL9A1P20849 SNORD114-6-201ENST00000364393 72 ntBASIC3.79□□□□□ -1.8
COL9A1P20849 SNORD6-201ENST00000365444 73 ntBASIC3.79□□□□□ -1.8
COL9A1P20849 RN7SKP192-201ENST00000411291 327 ntBASIC3.79□□□□□ -1.8
COL9A1P20849 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC3.79□□□□□ -1.8
COL9A1P20849 AC069285.2-201ENST00000440210 275 ntBASIC3.79□□□□□ -1.8
COL9A1P20849 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.79□□□□□ -1.8
COL9A1P20849 AL355297.2-201ENST00000604792 129 ntBASIC3.79□□□□□ -1.8
COL9A1P20849 AC103810.6-201ENST00000606708 136 ntBASIC3.79□□□□□ -1.8
COL9A1P20849 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL9A1P20849 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC3.79□□□□□ -1.8
COL9A1P20849 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL9A1P20849 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
COL9A1P20849 AC027290.2-201ENST00000623210 18662 ntBASIC3.78□□□□□ -1.8
COL9A1P20849 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL9A1P20849 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL9A1P20849 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
COL9A1P20849 RPL23AP48-201ENST00000406913 488 ntBASIC3.78□□□□□ -1.8
COL9A1P20849 RNA5SP164-201ENST00000516533 110 ntBASIC3.78□□□□□ -1.8
COL9A1P20849 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.78□□□□□ -1.8
COL9A1P20849 MIR7851-201ENST00000610611 160 ntBASIC3.78□□□□□ -1.8
COL9A1P20849 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC3.78□□□□□ -1.8
COL9A1P20849 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
COL9A1P20849 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.78□□□□□ -1.8
COL9A1P20849 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
COL9A1P20849 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL9A1P20849 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.78□□□□□ -1.8
COL9A1P20849 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
COL9A1P20849 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL9A1P20849 SNORD9-201ENST00000362566 104 ntBASIC3.77□□□□□ -1.81
COL9A1P20849 RNU6-862P-201ENST00000362804 105 ntBASIC3.77□□□□□ -1.81
COL9A1P20849 SNORD115-27-201ENST00000364430 82 ntBASIC3.77□□□□□ -1.81
COL9A1P20849 SNORA32-201ENST00000384072 121 ntBASIC3.77□□□□□ -1.81
COL9A1P20849 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
COL9A1P20849 SNORA26.6-201ENST00000391256 115 ntBASIC3.77□□□□□ -1.81
COL9A1P20849 STAG3L5P-204ENST00000443759 179 ntBASIC3.77□□□□□ -1.81
COL9A1P20849 RPS29P28-201ENST00000446439 141 ntBASIC3.77□□□□□ -1.81
COL9A1P20849 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.77□□□□□ -1.81
COL9A1P20849 AC006539.3-201ENST00000454258 129 ntBASIC3.77□□□□□ -1.81
COL9A1P20849 AC114801.3-201ENST00000510231 177 ntBASIC3.77□□□□□ -1.81
COL9A1P20849 RNA5SP356-201ENST00000515972 94 ntBASIC3.77□□□□□ -1.81
COL9A1P20849 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL9A1P20849 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC3.77□□□□□ -1.81
COL9A1P20849 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
COL9A1P20849 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC3.77□□□□□ -1.81
COL9A1P20849 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL9A1P20849 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
COL9A1P20849 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.77□□□□□ -1.81
COL9A1P20849 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
COL9A1P20849 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL9A1P20849 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.76□□□□□ -1.81
COL9A1P20849 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.76□□□□□ -1.81
COL9A1P20849 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
COL9A1P20849 MIRLET7C-201ENST00000362160 84 ntBASIC3.76□□□□□ -1.81
COL9A1P20849 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.76□□□□□ -1.81
COL9A1P20849 SEM1P1-201ENST00000506694 209 ntBASIC3.76□□□□□ -1.81
COL9A1P20849 RNA5SP445-201ENST00000515889 115 ntBASIC3.76□□□□□ -1.81
COL9A1P20849 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.76□□□□□ -1.81
COL9A1P20849 AC140658.3-201ENST00000567603 271 ntBASIC3.76□□□□□ -1.81
COL9A1P20849 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.76□□□□□ -1.81
COL9A1P20849 MIR6717-201ENST00000622747 73 ntBASIC3.76□□□□□ -1.81
COL9A1P20849 AC091152.2-201ENST00000591628 2569 ntBASIC3.76□□□□□ -1.81
COL9A1P20849 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC3.76□□□□□ -1.81
COL9A1P20849 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL9A1P20849 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL9A1P20849 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL9A1P20849 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.75□□□□□ -1.81
COL9A1P20849 RNU4-35P-201ENST00000362588 141 ntBASIC3.75□□□□□ -1.81
COL9A1P20849 Y_RNA.164-201ENST00000363709 102 ntBASIC3.75□□□□□ -1.81
COL9A1P20849 Y_RNA.226-201ENST00000364337 114 ntBASIC3.75□□□□□ -1.81
COL9A1P20849 SNORA70B-201ENST00000384210 135 ntBASIC3.75□□□□□ -1.81
COL9A1P20849 Y_RNA.567-201ENST00000384736 106 ntBASIC3.75□□□□□ -1.81
COL9A1P20849 RPL31P63-201ENST00000422565 375 ntBASIC3.75□□□□□ -1.81
COL9A1P20849 AL606517.2-201ENST00000442855 241 ntBASIC3.75□□□□□ -1.81
COL9A1P20849 RPS29P29-201ENST00000456396 171 ntBASIC3.75□□□□□ -1.81
COL9A1P20849 RNU7-67P-201ENST00000459003 62 ntBASIC3.75□□□□□ -1.81
COL9A1P20849 SNORD59.2-201ENST00000516873 68 ntBASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 258.2 ms