Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.85□□□□□ -2.27
MSH4O15457 SNORD124-201ENST00000459577 104 ntBASIC0.85□□□□□ -2.27
MSH4O15457 RNU4-77P-201ENST00000516692 156 ntBASIC0.85□□□□□ -2.27
MSH4O15457 MIR5188-201ENST00000583467 113 ntBASIC0.85□□□□□ -2.27
MSH4O15457 SNORD58B-201ENST00000607313 66 ntBASIC0.85□□□□□ -2.27
MSH4O15457 AC004832.4-201ENST00000608952 331 ntBASIC0.85□□□□□ -2.27
MSH4O15457 AC006157.1-201ENST00000611750 366 ntBASIC0.85□□□□□ -2.27
MSH4O15457 AC007485.1-201ENST00000616755 206 ntBASIC0.85□□□□□ -2.27
MSH4O15457 AC027279.3-201ENST00000625055 122 ntBASIC0.85□□□□□ -2.27
MSH4O15457 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
MSH4O15457 MIR369-201ENST00000362155 70 ntBASIC0.84□□□□□ -2.27
MSH4O15457 Y_RNA.27-201ENST00000362540 103 ntBASIC0.84□□□□□ -2.27
MSH4O15457 RNU2-54P-201ENST00000410299 190 ntBASIC0.84□□□□□ -2.27
MSH4O15457 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.84□□□□□ -2.27
MSH4O15457 AC114811.1-201ENST00000507207 168 ntBASIC0.84□□□□□ -2.27
MSH4O15457 RNU6-436P-201ENST00000516171 114 ntBASIC0.84□□□□□ -2.27
MSH4O15457 AC136932.1-201ENST00000574771 208 ntBASIC0.84□□□□□ -2.27
MSH4O15457 AL020996.3-201ENST00000606617 222 ntBASIC0.84□□□□□ -2.27
MSH4O15457 AL096861.1-201ENST00000610899 123 ntBASIC0.84□□□□□ -2.27
MSH4O15457 AL591926.4-201ENST00000616895 298 ntBASIC0.84□□□□□ -2.27
MSH4O15457 AC091925.1-201ENST00000623204 462 ntBASIC0.84□□□□□ -2.27
MSH4O15457 AL008636.1-201ENST00000625038 1018 ntBASIC0.84□□□□□ -2.27
MSH4O15457 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.84□□□□□ -2.27
MSH4O15457 AC008163.1-202ENST00000636004 2889 ntBASIC0.84□□□□□ -2.28
MSH4O15457 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.83□□□□□ -2.28
MSH4O15457 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
MSH4O15457 SNORD114-24-201ENST00000365029 72 ntBASIC0.83□□□□□ -2.28
MSH4O15457 RNU6-1175P-201ENST00000365200 107 ntBASIC0.83□□□□□ -2.28
MSH4O15457 Y_RNA.329-201ENST00000365209 107 ntBASIC0.83□□□□□ -2.28
MSH4O15457 Y_RNA.336-201ENST00000365307 109 ntBASIC0.83□□□□□ -2.28
MSH4O15457 MIR452-201ENST00000385020 85 ntBASIC0.83□□□□□ -2.28
MSH4O15457 AL160004.2-201ENST00000432935 350 ntBASIC0.83□□□□□ -2.28
MSH4O15457 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.83□□□□□ -2.28
MSH4O15457 RPS26P48-201ENST00000491713 339 ntBASIC0.83□□□□□ -2.28
MSH4O15457 RNA5SP436-201ENST00000516020 115 ntBASIC0.83□□□□□ -2.28
MSH4O15457 RNU6-911P-201ENST00000516523 104 ntBASIC0.83□□□□□ -2.28
MSH4O15457 PRELID3BP2-201ENST00000605362 201 ntBASIC0.83□□□□□ -2.28
MSH4O15457 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC0.83□□□□□ -2.28
MSH4O15457 Y_RNA.31-201ENST00000362574 102 ntBASIC0.82□□□□□ -2.28
MSH4O15457 Y_RNA.39-201ENST00000362620 98 ntBASIC0.82□□□□□ -2.28
MSH4O15457 Y_RNA.143-201ENST00000363520 106 ntBASIC0.82□□□□□ -2.28
MSH4O15457 Y_RNA.197-201ENST00000364004 102 ntBASIC0.82□□□□□ -2.28
MSH4O15457 RNU6-969P-201ENST00000383900 105 ntBASIC0.82□□□□□ -2.28
MSH4O15457 Y_RNA.458-201ENST00000384240 102 ntBASIC0.82□□□□□ -2.28
MSH4O15457 MIR200A-201ENST00000384875 90 ntBASIC0.82□□□□□ -2.28
MSH4O15457 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.82□□□□□ -2.28
MSH4O15457 RNU4-30P-201ENST00000410245 143 ntBASIC0.82□□□□□ -2.28
MSH4O15457 AC245047.8-201ENST00000456455 284 ntBASIC0.82□□□□□ -2.28
MSH4O15457 AL080274.1-201ENST00000605565 220 ntBASIC0.82□□□□□ -2.28
MSH4O15457 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.82□□□□□ -2.28
MSH4O15457 AL606534.2-204ENST00000635008 178 ntBASIC0.82□□□□□ -2.28
MSH4O15457 MIR6866-201ENST00000638146 69 ntBASIC0.82□□□□□ -2.28
MSH4O15457 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
MSH4O15457 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.81□□□□□ -2.28
MSH4O15457 U8.5-201ENST00000364528 136 ntBASIC0.81□□□□□ -2.28
MSH4O15457 Y_RNA.252-201ENST00000364556 101 ntBASIC0.81□□□□□ -2.28
MSH4O15457 RNU1-36P-201ENST00000365130 165 ntBASIC0.81□□□□□ -2.28
MSH4O15457 RNU6-937P-201ENST00000384325 106 ntBASIC0.81□□□□□ -2.28
MSH4O15457 SNORA75.2-201ENST00000391138 150 ntBASIC0.81□□□□□ -2.28
MSH4O15457 SNORA75.3-201ENST00000391231 150 ntBASIC0.81□□□□□ -2.28
MSH4O15457 RNU2-61P-201ENST00000411069 191 ntBASIC0.81□□□□□ -2.28
MSH4O15457 RNU7-21P-201ENST00000459430 62 ntBASIC0.81□□□□□ -2.28
MSH4O15457 AC010655.3-201ENST00000478818 450 ntBASIC0.81□□□□□ -2.28
MSH4O15457 PDCD5P2-201ENST00000507570 312 ntBASIC0.81□□□□□ -2.28
MSH4O15457 SNORA25.10-201ENST00000515926 124 ntBASIC0.81□□□□□ -2.28
MSH4O15457 ACA64.5-201ENST00000516207 127 ntBASIC0.81□□□□□ -2.28
MSH4O15457 MIR3145-201ENST00000580727 82 ntBASIC0.81□□□□□ -2.28
MSH4O15457 RPS29P30-201ENST00000600975 111 ntBASIC0.81□□□□□ -2.28
MSH4O15457 AC013244.2-201ENST00000603396 103 ntBASIC0.81□□□□□ -2.28
MSH4O15457 LARP7P1-201ENST00000605576 316 ntBASIC0.81□□□□□ -2.28
MSH4O15457 AC022441.3-201ENST00000605737 136 ntBASIC0.81□□□□□ -2.28
MSH4O15457 AL391903.3-201ENST00000612158 163 ntBASIC0.81□□□□□ -2.28
MSH4O15457 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.81□□□□□ -2.28
MSH4O15457 MIR6835-201ENST00000621552 64 ntBASIC0.81□□□□□ -2.28
MSH4O15457 uc_338.22-201ENST00000622722 187 ntBASIC0.81□□□□□ -2.28
MSH4O15457 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.81□□□□□ -2.28
MSH4O15457 Y_RNA.331-201ENST00000365267 102 ntBASIC0.8□□□□□ -2.28
MSH4O15457 Y_RNA.570-201ENST00000384750 101 ntBASIC0.8□□□□□ -2.28
MSH4O15457 MT-TD-201ENST00000387419 68 ntBASIC0.8□□□□□ -2.28
MSH4O15457 MIR1298-201ENST00000408783 112 ntBASIC0.8□□□□□ -2.28
MSH4O15457 MLLT10P1-201ENST00000418346 262 ntBASIC0.8□□□□□ -2.28
MSH4O15457 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.8□□□□□ -2.28
MSH4O15457 RPS20P10-201ENST00000451209 253 ntBASIC0.8□□□□□ -2.28
MSH4O15457 RNU6-976P-201ENST00000516086 111 ntBASIC0.8□□□□□ -2.28
MSH4O15457 RN7SKP295-201ENST00000517264 153 ntBASIC0.8□□□□□ -2.28
MSH4O15457 AP001094.1-201ENST00000579805 193 ntBASIC0.8□□□□□ -2.28
MSH4O15457 MIR4714-201ENST00000580728 77 ntBASIC0.8□□□□□ -2.28
MSH4O15457 MIR3192-201ENST00000584920 77 ntBASIC0.8□□□□□ -2.28
MSH4O15457 MIR4762-201ENST00000585261 75 ntBASIC0.8□□□□□ -2.28
MSH4O15457 DEFB117-201ENST00000602356 141 ntBASIC0.8□□□□□ -2.28
MSH4O15457 Y_RNA.772-201ENST00000606692 102 ntBASIC0.8□□□□□ -2.28
MSH4O15457 PVT1_3.1-201ENST00000620853 95 ntBASIC0.8□□□□□ -2.28
MSH4O15457 SNORD81.1-201ENST00000363064 77 ntBASIC0.79□□□□□ -2.28
MSH4O15457 RNU6-867P-201ENST00000364956 107 ntBASIC0.79□□□□□ -2.28
MSH4O15457 Y_RNA.394-201ENST00000383942 103 ntBASIC0.79□□□□□ -2.28
MSH4O15457 Y_RNA.471-201ENST00000384312 102 ntBASIC0.79□□□□□ -2.28
MSH4O15457 MIR516B2-201ENST00000385190 85 ntBASIC0.79□□□□□ -2.28
MSH4O15457 MIR942-201ENST00000401111 86 ntBASIC0.79□□□□□ -2.28
MSH4O15457 AL590004.1-201ENST00000405321 300 ntBASIC0.79□□□□□ -2.28
MSH4O15457 RNU6-130P-201ENST00000411112 103 ntBASIC0.79□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 189.7 ms