Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 RNU4-28P-201ENST00000364739 141 ntBASIC-1.88□□□□□ -2.71
CCDC88BA6NC98 RNU6-900P-201ENST00000384498 102 ntBASIC-1.88□□□□□ -2.71
CCDC88BA6NC98 BNIP3P40-201ENST00000596017 556 ntBASIC-1.88□□□□□ -2.71
CCDC88BA6NC98 AC069545.1-201ENST00000605671 358 ntBASIC-1.88□□□□□ -2.71
CCDC88BA6NC98 Y_RNA.539-201ENST00000384635 107 ntBASIC-1.88□□□□□ -2.71
CCDC88BA6NC98 AL512286.1-201ENST00000439244 400 ntBASIC-1.88□□□□□ -2.71
CCDC88BA6NC98 MTCO2P6-201ENST00000463134 685 ntBASIC-1.88□□□□□ -2.71
CCDC88BA6NC98 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.88□□□□□ -2.71
CCDC88BA6NC98 MTND1P5-201ENST00000517906 940 ntBASIC-1.88□□□□□ -2.71
CCDC88BA6NC98 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC-1.88□□□□□ -2.71
CCDC88BA6NC98 AL049777.1-201ENST00000622740 518 ntBASIC-1.88□□□□□ -2.71
CCDC88BA6NC98 MIR181B2-201ENST00000385004 89 ntBASIC-1.89□□□□□ -2.71
CCDC88BA6NC98 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC-1.89□□□□□ -2.71
CCDC88BA6NC98 MTATP6P17-201ENST00000431030 672 ntBASIC-1.89□□□□□ -2.71
CCDC88BA6NC98 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC-1.89□□□□□ -2.71
CCDC88BA6NC98 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC-1.89□□□□□ -2.71
CCDC88BA6NC98 AC105417.1-201ENST00000514691 285 ntBASIC-1.89□□□□□ -2.71
CCDC88BA6NC98 Y_RNA.674-201ENST00000516362 113 ntBASIC-1.89□□□□□ -2.71
CCDC88BA6NC98 AC026421.1-201ENST00000519101 163 ntBASIC-1.89□□□□□ -2.71
CCDC88BA6NC98 AC139792.3-201ENST00000623525 224 ntBASIC-1.89□□□□□ -2.71
CCDC88BA6NC98 RNU6-324P-201ENST00000363957 106 ntBASIC-1.9□□□□□ -2.71
CCDC88BA6NC98 SNORA1.2-201ENST00000365189 134 ntBASIC-1.9□□□□□ -2.71
CCDC88BA6NC98 Y_RNA.415-201ENST00000384012 112 ntBASIC-1.9□□□□□ -2.71
CCDC88BA6NC98 MIR487A-201ENST00000385009 80 ntBASIC-1.9□□□□□ -2.71
CCDC88BA6NC98 U8.15-201ENST00000390947 134 ntBASIC-1.9□□□□□ -2.71
CCDC88BA6NC98 AC073464.1-201ENST00000429823 534 ntBASIC-1.9□□□□□ -2.71
CCDC88BA6NC98 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC-1.9□□□□□ -2.71
CCDC88BA6NC98 SNORA25.14-201ENST00000516481 132 ntBASIC-1.9□□□□□ -2.71
CCDC88BA6NC98 AC022784.5-201ENST00000522241 437 ntBASIC-1.9□□□□□ -2.71
CCDC88BA6NC98 AP000676.1-201ENST00000533307 52 ntBASIC-1.9□□□□□ -2.71
CCDC88BA6NC98 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC-1.9□□□□□ -2.71
CCDC88BA6NC98 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC-1.9□□□□□ -2.71
CCDC88BA6NC98 RMST_3.1-201ENST00000611651 109 ntBASIC-1.9□□□□□ -2.71
CCDC88BA6NC98 AC132825.6-201ENST00000638861 357 ntBASIC-1.9□□□□□ -2.71
CCDC88BA6NC98 RNU6-865P-201ENST00000364772 107 ntBASIC-1.91□□□□□ -2.72
CCDC88BA6NC98 RNU6-1303P-201ENST00000364841 107 ntBASIC-1.91□□□□□ -2.72
CCDC88BA6NC98 SNORA72.6-201ENST00000384520 129 ntBASIC-1.91□□□□□ -2.72
CCDC88BA6NC98 MIR1284-201ENST00000408337 120 ntBASIC-1.91□□□□□ -2.72
CCDC88BA6NC98 RNA5SP475-201ENST00000410568 110 ntBASIC-1.91□□□□□ -2.72
CCDC88BA6NC98 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC-1.91□□□□□ -2.72
CCDC88BA6NC98 AC018710.1-201ENST00000506509 158 ntBASIC-1.91□□□□□ -2.72
CCDC88BA6NC98 Y_RNA.711-201ENST00000516993 102 ntBASIC-1.91□□□□□ -2.72
CCDC88BA6NC98 AC123904.2-201ENST00000548059 300 ntBASIC-1.91□□□□□ -2.72
CCDC88BA6NC98 AL356055.1-201ENST00000602528 446 ntBASIC-1.91□□□□□ -2.72
CCDC88BA6NC98 SRP54-214ENST00000630962 162 ntTSL 5 BASIC-1.91□□□□□ -2.72
CCDC88BA6NC98 Y_RNA.184-201ENST00000363884 108 ntBASIC-1.92□□□□□ -2.72
CCDC88BA6NC98 Y_RNA.490-201ENST00000384413 102 ntBASIC-1.92□□□□□ -2.72
CCDC88BA6NC98 RNU6-131P-201ENST00000391144 107 ntBASIC-1.92□□□□□ -2.72
CCDC88BA6NC98 AL137792.2-201ENST00000443484 235 ntBASIC-1.92□□□□□ -2.72
CCDC88BA6NC98 RNU6-765P-201ENST00000516916 99 ntBASIC-1.92□□□□□ -2.72
CCDC88BA6NC98 MTND3P13-201ENST00000574391 343 ntBASIC-1.92□□□□□ -2.72
CCDC88BA6NC98 MIR4491-201ENST00000581087 68 ntBASIC-1.92□□□□□ -2.72
CCDC88BA6NC98 Y_RNA.22-201ENST00000362492 102 ntBASIC-1.93□□□□□ -2.72
CCDC88BA6NC98 Y_RNA.86-201ENST00000363020 111 ntBASIC-1.93□□□□□ -2.72
CCDC88BA6NC98 SNORD56.2-201ENST00000363242 71 ntBASIC-1.93□□□□□ -2.72
CCDC88BA6NC98 RNU6-509P-201ENST00000363519 107 ntBASIC-1.93□□□□□ -2.72
CCDC88BA6NC98 NDUFAF4P4-201ENST00000454883 502 ntBASIC-1.93□□□□□ -2.72
CCDC88BA6NC98 RNU2-13P-201ENST00000515909 113 ntBASIC-1.93□□□□□ -2.72
CCDC88BA6NC98 AL596211.1-201ENST00000569873 2277 ntBASIC-1.93□□□□□ -2.72
CCDC88BA6NC98 SNORA27.1-201ENST00000362604 124 ntBASIC-1.94□□□□□ -2.72
CCDC88BA6NC98 SNORD12C-201ENST00000386307 89 ntBASIC-1.94□□□□□ -2.72
CCDC88BA6NC98 AL008987.1-201ENST00000415528 237 ntBASIC-1.94□□□□□ -2.72
CCDC88BA6NC98 USP9YP12-201ENST00000450481 570 ntBASIC-1.94□□□□□ -2.72
CCDC88BA6NC98 RNU7-67P-201ENST00000459003 62 ntBASIC-1.94□□□□□ -2.72
CCDC88BA6NC98 RNU6-830P-201ENST00000516353 107 ntBASIC-1.94□□□□□ -2.72
CCDC88BA6NC98 AL391834.2-201ENST00000609982 546 ntBASIC-1.94□□□□□ -2.72
CCDC88BA6NC98 AL354950.2-201ENST00000617939 290 ntBASIC-1.94□□□□□ -2.72
CCDC88BA6NC98 Y_RNA.450-201ENST00000384198 113 ntBASIC-1.94□□□□□ -2.72
CCDC88BA6NC98 RNA5SP484-201ENST00000458857 111 ntBASIC-1.94□□□□□ -2.72
CCDC88BA6NC98 RNU7-104P-201ENST00000459398 79 ntBASIC-1.94□□□□□ -2.72
CCDC88BA6NC98 RNU6-107P-201ENST00000516643 102 ntBASIC-1.94□□□□□ -2.72
CCDC88BA6NC98 RNU6-1332P-201ENST00000516666 104 ntBASIC-1.94□□□□□ -2.72
CCDC88BA6NC98 RNU6-175P-201ENST00000516896 107 ntBASIC-1.94□□□□□ -2.72
CCDC88BA6NC98 RNU6-958P-201ENST00000516995 106 ntBASIC-1.94□□□□□ -2.72
CCDC88BA6NC98 AC107934.1-201ENST00000522215 217 ntBASIC-1.94□□□□□ -2.72
CCDC88BA6NC98 AP002371.2-201ENST00000624450 503 ntBASIC-1.94□□□□□ -2.72
CCDC88BA6NC98 MIR1246-201ENST00000636535 73 ntBASIC-1.94□□□□□ -2.72
CCDC88BA6NC98 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC-1.95□□□□□ -2.72
CCDC88BA6NC98 Y_RNA.37-201ENST00000362606 108 ntBASIC-1.95□□□□□ -2.72
CCDC88BA6NC98 SNORD114-29-201ENST00000364819 70 ntBASIC-1.95□□□□□ -2.72
CCDC88BA6NC98 RNU6-1036P-201ENST00000383959 104 ntBASIC-1.95□□□□□ -2.72
CCDC88BA6NC98 RNU6-245P-201ENST00000384020 107 ntBASIC-1.95□□□□□ -2.72
CCDC88BA6NC98 UQCRBP2-201ENST00000447827 297 ntBASIC-1.95□□□□□ -2.72
CCDC88BA6NC98 RNU6-1178P-201ENST00000516674 107 ntBASIC-1.95□□□□□ -2.72
CCDC88BA6NC98 RNA5SP54-201ENST00000516951 92 ntBASIC-1.95□□□□□ -2.72
CCDC88BA6NC98 MIR8055-201ENST00000610739 97 ntBASIC-1.95□□□□□ -2.72
CCDC88BA6NC98 Y_RNA.146-201ENST00000363549 102 ntBASIC-1.96□□□□□ -2.72
CCDC88BA6NC98 RNU6-61P-201ENST00000365528 109 ntBASIC-1.96□□□□□ -2.72
CCDC88BA6NC98 Y_RNA.562-201ENST00000384695 113 ntBASIC-1.96□□□□□ -2.72
CCDC88BA6NC98 MTCYBP4-201ENST00000401524 249 ntBASIC-1.96□□□□□ -2.72
CCDC88BA6NC98 AL354751.2-201ENST00000415471 210 ntBASIC-1.96□□□□□ -2.72
CCDC88BA6NC98 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC-1.96□□□□□ -2.72
CCDC88BA6NC98 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC-1.96□□□□□ -2.72
CCDC88BA6NC98 Y_RNA.714-201ENST00000517065 90 ntBASIC-1.96□□□□□ -2.72
CCDC88BA6NC98 RNU7-161P-201ENST00000517289 62 ntBASIC-1.96□□□□□ -2.72
CCDC88BA6NC98 AP003072.1-201ENST00000531740 145 ntBASIC-1.96□□□□□ -2.72
CCDC88BA6NC98 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC-1.97□□□□□ -2.72
CCDC88BA6NC98 SNORD14E-201ENST00000364009 85 ntBASIC-1.97□□□□□ -2.72
CCDC88BA6NC98 Y_RNA.329-201ENST00000365209 107 ntBASIC-1.97□□□□□ -2.72
CCDC88BA6NC98 RNU6-117P-201ENST00000365415 107 ntBASIC-1.97□□□□□ -2.72
Retrieved 100 of 98,524 protein–RNA pairs in 202.2 ms