Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 SNORD115-46-201ENST00000390982 71 ntBASIC1.26□□□□□ -2.21
LIME1Q9H400 RNU1-78P-201ENST00000391248 165 ntBASIC1.26□□□□□ -2.21
LIME1Q9H400 MIR1304-201ENST00000408243 91 ntBASIC1.26□□□□□ -2.21
LIME1Q9H400 RNU6-101P-201ENST00000410323 104 ntBASIC1.26□□□□□ -2.21
LIME1Q9H400 RNU6-710P-201ENST00000410424 105 ntBASIC1.26□□□□□ -2.21
LIME1Q9H400 AL135790.2-201ENST00000437701 267 ntBASIC1.26□□□□□ -2.21
LIME1Q9H400 HSPE1P24-201ENST00000450782 238 ntBASIC1.26□□□□□ -2.21
LIME1Q9H400 RPS20P10-201ENST00000451209 253 ntBASIC1.26□□□□□ -2.21
LIME1Q9H400 RNA5SP61-201ENST00000516453 100 ntBASIC1.26□□□□□ -2.21
LIME1Q9H400 RNU6-1046P-201ENST00000516538 107 ntBASIC1.26□□□□□ -2.21
LIME1Q9H400 RNU6-1291P-201ENST00000516591 104 ntBASIC1.26□□□□□ -2.21
LIME1Q9H400 RNU2-56P-201ENST00000516826 190 ntBASIC1.26□□□□□ -2.21
LIME1Q9H400 RNU7-110P-201ENST00000516891 62 ntBASIC1.26□□□□□ -2.21
LIME1Q9H400 AL355297.3-201ENST00000604082 446 ntBASIC1.26□□□□□ -2.21
LIME1Q9H400 SNORD113-5-201ENST00000607261 78 ntBASIC1.26□□□□□ -2.21
LIME1Q9H400 AC073349.3-201ENST00000617616 186 ntBASIC1.26□□□□□ -2.21
LIME1Q9H400 Y_RNA.310-201ENST00000365063 113 ntBASIC1.25□□□□□ -2.21
LIME1Q9H400 RNU6-424P-201ENST00000384367 105 ntBASIC1.25□□□□□ -2.21
LIME1Q9H400 MIR513A1-201ENST00000385138 129 ntBASIC1.25□□□□□ -2.21
LIME1Q9H400 MIR660-201ENST00000385235 97 ntBASIC1.25□□□□□ -2.21
LIME1Q9H400 RNA5SP482-201ENST00000391269 118 ntBASIC1.25□□□□□ -2.21
LIME1Q9H400 RNU4-30P-201ENST00000410245 143 ntBASIC1.25□□□□□ -2.21
LIME1Q9H400 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.25□□□□□ -2.21
LIME1Q9H400 RNU6-897P-201ENST00000517135 105 ntBASIC1.25□□□□□ -2.21
LIME1Q9H400 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC1.25□□□□□ -2.21
LIME1Q9H400 DEFB117-201ENST00000602356 141 ntBASIC1.25□□□□□ -2.21
LIME1Q9H400 PRR13P7-201ENST00000605538 430 ntBASIC1.25□□□□□ -2.21
LIME1Q9H400 MIR376A1-201ENST00000616574 68 ntBASIC1.25□□□□□ -2.21
LIME1Q9H400 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.25□□□□□ -2.21
LIME1Q9H400 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.25□□□□□ -2.21
LIME1Q9H400 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.24□□□□□ -2.21
LIME1Q9H400 MIRLET7C-201ENST00000362160 84 ntBASIC1.24□□□□□ -2.21
LIME1Q9H400 SNORD33-201ENST00000362761 85 ntBASIC1.24□□□□□ -2.21
LIME1Q9H400 Y_RNA.136-201ENST00000363444 102 ntBASIC1.24□□□□□ -2.21
LIME1Q9H400 Y_RNA.202-201ENST00000364083 110 ntBASIC1.24□□□□□ -2.21
LIME1Q9H400 Y_RNA.267-201ENST00000364679 109 ntBASIC1.24□□□□□ -2.21
LIME1Q9H400 Y_RNA.286-201ENST00000364813 102 ntBASIC1.24□□□□□ -2.21
LIME1Q9H400 Y_RNA.389-201ENST00000383924 113 ntBASIC1.24□□□□□ -2.21
LIME1Q9H400 Y_RNA.456-201ENST00000384232 111 ntBASIC1.24□□□□□ -2.21
LIME1Q9H400 RNU6-102P-201ENST00000384485 104 ntBASIC1.24□□□□□ -2.21
LIME1Q9H400 RNU6-121P-201ENST00000410525 99 ntBASIC1.24□□□□□ -2.21
LIME1Q9H400 RPS27P16-201ENST00000425758 201 ntBASIC1.24□□□□□ -2.21
LIME1Q9H400 AC005534.2-201ENST00000431047 433 ntBASIC1.24□□□□□ -2.21
LIME1Q9H400 HSPE1P25-201ENST00000455484 251 ntBASIC1.24□□□□□ -2.21
LIME1Q9H400 HMGN1P10-201ENST00000474557 553 ntBASIC1.24□□□□□ -2.21
LIME1Q9H400 RNU6-496P-201ENST00000516145 99 ntBASIC1.24□□□□□ -2.21
LIME1Q9H400 RNU6-1153P-201ENST00000516760 105 ntBASIC1.24□□□□□ -2.21
LIME1Q9H400 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.24□□□□□ -2.21
LIME1Q9H400 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
LIME1Q9H400 Y_RNA.105-201ENST00000363182 111 ntBASIC1.23□□□□□ -2.21
LIME1Q9H400 Y_RNA.153-201ENST00000363615 91 ntBASIC1.23□□□□□ -2.21
LIME1Q9H400 SNORD114-27-201ENST00000363766 70 ntBASIC1.23□□□□□ -2.21
LIME1Q9H400 U8.5-201ENST00000364528 136 ntBASIC1.23□□□□□ -2.21
LIME1Q9H400 RNU6-21P-201ENST00000384710 107 ntBASIC1.23□□□□□ -2.21
LIME1Q9H400 Y_RNA.581-201ENST00000391017 97 ntBASIC1.23□□□□□ -2.21
LIME1Q9H400 RNU6-855P-201ENST00000410395 104 ntBASIC1.23□□□□□ -2.21
LIME1Q9H400 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.23□□□□□ -2.21
LIME1Q9H400 CALM2P4-201ENST00000430810 426 ntBASIC1.23□□□□□ -2.21
LIME1Q9H400 AL049830.1-201ENST00000468034 425 ntBASIC1.23□□□□□ -2.21
LIME1Q9H400 AC023790.1-201ENST00000482174 347 ntBASIC1.23□□□□□ -2.21
LIME1Q9H400 SEPT14P8-201ENST00000508026 178 ntBASIC1.23□□□□□ -2.21
LIME1Q9H400 RNU6-397P-201ENST00000516226 104 ntBASIC1.23□□□□□ -2.21
LIME1Q9H400 RNU6-902P-201ENST00000517212 91 ntBASIC1.23□□□□□ -2.21
LIME1Q9H400 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.23□□□□□ -2.21
LIME1Q9H400 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.23□□□□□ -2.21
LIME1Q9H400 MIR8063-201ENST00000621930 81 ntBASIC1.23□□□□□ -2.21
LIME1Q9H400 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.22□□□□□ -2.21
LIME1Q9H400 RNA5SP325-201ENST00000363756 130 ntBASIC1.22□□□□□ -2.21
LIME1Q9H400 RNU4-41P-201ENST00000364426 143 ntBASIC1.22□□□□□ -2.21
LIME1Q9H400 Y_RNA.265-201ENST00000364677 108 ntBASIC1.22□□□□□ -2.21
LIME1Q9H400 Y_RNA.383-201ENST00000383855 97 ntBASIC1.22□□□□□ -2.21
LIME1Q9H400 RNU6-1323P-201ENST00000384025 107 ntBASIC1.22□□□□□ -2.21
LIME1Q9H400 Y_RNA.418-201ENST00000384029 102 ntBASIC1.22□□□□□ -2.21
LIME1Q9H400 Y_RNA.527-201ENST00000384573 102 ntBASIC1.22□□□□□ -2.21
LIME1Q9H400 MIR613-201ENST00000385248 95 ntBASIC1.22□□□□□ -2.21
LIME1Q9H400 AL590004.1-201ENST00000405321 300 ntBASIC1.22□□□□□ -2.21
LIME1Q9H400 RPL30P13-201ENST00000418873 348 ntBASIC1.22□□□□□ -2.21
LIME1Q9H400 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.22□□□□□ -2.21
LIME1Q9H400 RNU6-1137P-201ENST00000517073 99 ntBASIC1.22□□□□□ -2.21
LIME1Q9H400 MIR4762-201ENST00000585261 75 ntBASIC1.22□□□□□ -2.21
LIME1Q9H400 AC005972.2-201ENST00000604690 348 ntBASIC1.22□□□□□ -2.21
LIME1Q9H400 MIR6078-201ENST00000611069 100 ntBASIC1.22□□□□□ -2.21
LIME1Q9H400 MIR6515-201ENST00000619843 57 ntBASIC1.22□□□□□ -2.21
LIME1Q9H400 SNORD113-8-201ENST00000363497 74 ntBASIC1.21□□□□□ -2.22
LIME1Q9H400 Y_RNA.214-201ENST00000364201 112 ntBASIC1.21□□□□□ -2.22
LIME1Q9H400 SNORA72-201ENST00000384339 132 ntBASIC1.21□□□□□ -2.22
LIME1Q9H400 RNU6-136P-201ENST00000384663 107 ntBASIC1.21□□□□□ -2.22
LIME1Q9H400 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.21□□□□□ -2.22
LIME1Q9H400 U8.16-201ENST00000391279 133 ntBASIC1.21□□□□□ -2.22
LIME1Q9H400 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.21□□□□□ -2.22
LIME1Q9H400 ELOCP20-201ENST00000422460 345 ntBASIC1.21□□□□□ -2.22
LIME1Q9H400 AC024067.1-201ENST00000426199 223 ntBASIC1.21□□□□□ -2.22
LIME1Q9H400 POLR2KP2-201ENST00000438155 177 ntBASIC1.21□□□□□ -2.22
LIME1Q9H400 Z98949.2-201ENST00000440996 144 ntBASIC1.21□□□□□ -2.22
LIME1Q9H400 SNRPGP13-201ENST00000442212 177 ntBASIC1.21□□□□□ -2.22
LIME1Q9H400 AC079140.2-201ENST00000506193 142 ntBASIC1.21□□□□□ -2.22
LIME1Q9H400 RNA5SP168-201ENST00000516642 112 ntBASIC1.21□□□□□ -2.22
LIME1Q9H400 AC131281.1-201ENST00000522984 164 ntBASIC1.21□□□□□ -2.22
LIME1Q9H400 MIR3145-201ENST00000580727 82 ntBASIC1.21□□□□□ -2.22
LIME1Q9H400 AL365434.2-201ENST00000607979 234 ntBASIC1.21□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 334.3 ms