Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AC093019.1-201ENST00000443135 252 ntBASIC0.9□□□□□ -2.27
CCDC43Q96MW1 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.9□□□□□ -2.27
CCDC43Q96MW1 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.9□□□□□ -2.27
CCDC43Q96MW1 SNORA70.12-201ENST00000516084 153 ntBASIC0.9□□□□□ -2.27
CCDC43Q96MW1 AC087588.2-201ENST00000617667 426 ntBASIC0.9□□□□□ -2.27
CCDC43Q96MW1 CASC19-280ENST00000642102 1351 ntBASIC0.9□□□□□ -2.27
CCDC43Q96MW1 SNORA69.1-201ENST00000390904 137 ntBASIC0.89□□□□□ -2.27
CCDC43Q96MW1 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC0.89□□□□□ -2.27
CCDC43Q96MW1 AC006461.1-201ENST00000412637 326 ntBASIC0.89□□□□□ -2.27
CCDC43Q96MW1 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC0.89□□□□□ -2.27
CCDC43Q96MW1 Y_RNA.655-201ENST00000515919 96 ntBASIC0.89□□□□□ -2.27
CCDC43Q96MW1 AC011604.1-201ENST00000545978 196 ntBASIC0.89□□□□□ -2.27
CCDC43Q96MW1 AC006380.1-201ENST00000603598 186 ntBASIC0.89□□□□□ -2.27
CCDC43Q96MW1 AL669831.3-213ENST00000636676 183 ntBASIC0.89□□□□□ -2.27
CCDC43Q96MW1 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
CCDC43Q96MW1 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.89□□□□□ -2.27
CCDC43Q96MW1 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.88□□□□□ -2.27
CCDC43Q96MW1 MIR373-201ENST00000362273 69 ntBASIC0.88□□□□□ -2.27
CCDC43Q96MW1 RNA5SP264-201ENST00000363115 107 ntBASIC0.88□□□□□ -2.27
CCDC43Q96MW1 Y_RNA.101-201ENST00000363154 102 ntBASIC0.88□□□□□ -2.27
CCDC43Q96MW1 Y_RNA.330-201ENST00000365230 109 ntBASIC0.88□□□□□ -2.27
CCDC43Q96MW1 MIR516B2-201ENST00000385190 85 ntBASIC0.88□□□□□ -2.27
CCDC43Q96MW1 AL031003.1-201ENST00000404229 172 ntBASIC0.88□□□□□ -2.27
CCDC43Q96MW1 RNU6-1156P-201ENST00000410365 100 ntBASIC0.88□□□□□ -2.27
CCDC43Q96MW1 RNU4-14P-201ENST00000410858 122 ntBASIC0.88□□□□□ -2.27
CCDC43Q96MW1 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.88□□□□□ -2.27
CCDC43Q96MW1 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.88□□□□□ -2.27
CCDC43Q96MW1 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.88□□□□□ -2.27
CCDC43Q96MW1 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.88□□□□□ -2.27
CCDC43Q96MW1 U8.5-201ENST00000364528 136 ntBASIC0.87□□□□□ -2.27
CCDC43Q96MW1 RNU6-767P-201ENST00000384132 107 ntBASIC0.87□□□□□ -2.27
CCDC43Q96MW1 MIR625-201ENST00000385047 85 ntBASIC0.87□□□□□ -2.27
CCDC43Q96MW1 MIR605-201ENST00000385078 83 ntBASIC0.87□□□□□ -2.27
CCDC43Q96MW1 MIR146A-201ENST00000385201 99 ntBASIC0.87□□□□□ -2.27
CCDC43Q96MW1 Y_RNA.592-201ENST00000410274 109 ntBASIC0.87□□□□□ -2.27
CCDC43Q96MW1 MLLT10P1-201ENST00000418346 262 ntBASIC0.87□□□□□ -2.27
CCDC43Q96MW1 AC004941.2-201ENST00000427009 228 ntBASIC0.87□□□□□ -2.27
CCDC43Q96MW1 SNORA25.10-201ENST00000515926 124 ntBASIC0.87□□□□□ -2.27
CCDC43Q96MW1 RNA5SP255-201ENST00000516370 107 ntBASIC0.87□□□□□ -2.27
CCDC43Q96MW1 RNU6-264P-201ENST00000517134 104 ntBASIC0.87□□□□□ -2.27
CCDC43Q96MW1 AC136628.3-201ENST00000521868 290 ntBASIC0.87□□□□□ -2.27
CCDC43Q96MW1 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.87□□□□□ -2.27
CCDC43Q96MW1 MIR4762-201ENST00000585261 75 ntBASIC0.87□□□□□ -2.27
CCDC43Q96MW1 AC023934.1-201ENST00000574529 2389 ntBASIC0.86□□□□□ -2.27
CCDC43Q96MW1 Y_RNA.172-201ENST00000363765 102 ntBASIC0.86□□□□□ -2.27
CCDC43Q96MW1 Y_RNA.577-201ENST00000384794 101 ntBASIC0.86□□□□□ -2.27
CCDC43Q96MW1 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC0.86□□□□□ -2.27
CCDC43Q96MW1 MTND4P17-201ENST00000470444 350 ntBASIC0.86□□□□□ -2.27
CCDC43Q96MW1 RNU6-351P-201ENST00000516097 100 ntBASIC0.86□□□□□ -2.27
CCDC43Q96MW1 SNORA74.3-201ENST00000517108 154 ntBASIC0.86□□□□□ -2.27
CCDC43Q96MW1 MIR151B-201ENST00000584249 96 ntBASIC0.86□□□□□ -2.27
CCDC43Q96MW1 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC0.86□□□□□ -2.27
CCDC43Q96MW1 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC0.86□□□□□ -2.27
CCDC43Q96MW1 SNORA25.3-201ENST00000363205 127 ntBASIC0.85□□□□□ -2.27
CCDC43Q96MW1 MIR520C-201ENST00000385005 87 ntBASIC0.85□□□□□ -2.27
CCDC43Q96MW1 MIR136-201ENST00000385207 82 ntBASIC0.85□□□□□ -2.27
CCDC43Q96MW1 MIR100-201ENST00000385259 80 ntBASIC0.85□□□□□ -2.27
CCDC43Q96MW1 RNU2-54P-201ENST00000410299 190 ntBASIC0.85□□□□□ -2.27
CCDC43Q96MW1 FCF1P9-201ENST00000412546 282 ntBASIC0.85□□□□□ -2.27
CCDC43Q96MW1 AC106800.4-201ENST00000614905 153 ntBASIC0.85□□□□□ -2.27
CCDC43Q96MW1 AC240442.1-201ENST00000616055 283 ntBASIC0.85□□□□□ -2.27
CCDC43Q96MW1 MIR6788-201ENST00000618842 66 ntBASIC0.85□□□□□ -2.27
CCDC43Q96MW1 MIR103A2-201ENST00000362154 78 ntBASIC0.84□□□□□ -2.27
CCDC43Q96MW1 RNU6-1084P-201ENST00000362498 107 ntBASIC0.84□□□□□ -2.27
CCDC43Q96MW1 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.84□□□□□ -2.27
CCDC43Q96MW1 AL390729.2-201ENST00000416137 156 ntBASIC0.84□□□□□ -2.27
CCDC43Q96MW1 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.84□□□□□ -2.27
CCDC43Q96MW1 FABP5P4-201ENST00000437203 171 ntBASIC0.84□□□□□ -2.27
CCDC43Q96MW1 RNU7-169P-201ENST00000459456 61 ntBASIC0.84□□□□□ -2.27
CCDC43Q96MW1 RNU7-41P-201ENST00000515917 61 ntBASIC0.84□□□□□ -2.27
CCDC43Q96MW1 AP003716.2-201ENST00000528260 108 ntBASIC0.84□□□□□ -2.27
CCDC43Q96MW1 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.84□□□□□ -2.27
CCDC43Q96MW1 CYP3A137P-201ENST00000562436 69 ntBASIC0.84□□□□□ -2.27
CCDC43Q96MW1 AC023827.1-201ENST00000569247 97 ntBASIC0.84□□□□□ -2.27
CCDC43Q96MW1 MIR4653-201ENST00000585107 83 ntBASIC0.84□□□□□ -2.27
CCDC43Q96MW1 MIR6734-201ENST00000621166 68 ntBASIC0.84□□□□□ -2.27
CCDC43Q96MW1 RNU6-324P-201ENST00000363957 106 ntBASIC0.83□□□□□ -2.28
CCDC43Q96MW1 Y_RNA.253-201ENST00000364562 112 ntBASIC0.83□□□□□ -2.28
CCDC43Q96MW1 MIR522-201ENST00000385071 87 ntBASIC0.83□□□□□ -2.28
CCDC43Q96MW1 MIR548J-201ENST00000408833 112 ntBASIC0.83□□□□□ -2.28
CCDC43Q96MW1 Y_RNA.646-201ENST00000410980 101 ntBASIC0.83□□□□□ -2.28
CCDC43Q96MW1 AL606490.4-201ENST00000423117 127 ntBASIC0.83□□□□□ -2.28
CCDC43Q96MW1 MRPS18CP6-201ENST00000423587 223 ntBASIC0.83□□□□□ -2.28
CCDC43Q96MW1 AL035398.1-201ENST00000430869 322 ntBASIC0.83□□□□□ -2.28
CCDC43Q96MW1 MTND1P4-201ENST00000435196 415 ntBASIC0.83□□□□□ -2.28
CCDC43Q96MW1 FCF1P4-201ENST00000448326 183 ntBASIC0.83□□□□□ -2.28
CCDC43Q96MW1 RPL30P15-201ENST00000457129 321 ntBASIC0.83□□□□□ -2.28
CCDC43Q96MW1 RNA5SP220-201ENST00000516298 104 ntBASIC0.83□□□□□ -2.28
CCDC43Q96MW1 SNORD45.4-201ENST00000516629 73 ntBASIC0.83□□□□□ -2.28
CCDC43Q96MW1 SNORA18.7-201ENST00000516910 131 ntBASIC0.83□□□□□ -2.28
CCDC43Q96MW1 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC0.83□□□□□ -2.28
CCDC43Q96MW1 AC005176.2-201ENST00000596933 147 ntBASIC0.83□□□□□ -2.28
CCDC43Q96MW1 MIR6835-201ENST00000621552 64 ntBASIC0.83□□□□□ -2.28
CCDC43Q96MW1 RNU6-845P-201ENST00000362578 103 ntBASIC0.82□□□□□ -2.28
CCDC43Q96MW1 RNU6-626P-201ENST00000363354 107 ntBASIC0.82□□□□□ -2.28
CCDC43Q96MW1 AC117470.1-201ENST00000381974 330 ntBASIC0.82□□□□□ -2.28
CCDC43Q96MW1 RNU6-20P-201ENST00000384106 107 ntBASIC0.82□□□□□ -2.28
CCDC43Q96MW1 RNU6-1199P-201ENST00000411249 104 ntBASIC0.82□□□□□ -2.28
CCDC43Q96MW1 RNU6-1304P-201ENST00000411374 106 ntBASIC0.82□□□□□ -2.28
CCDC43Q96MW1 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC0.82□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 207.5 ms