Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 Y_RNA.140-201ENST00000363474 103 ntBASIC3.92□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 Y_RNA.203-201ENST00000364106 102 ntBASIC3.92□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 SNORA71.1-201ENST00000364523 117 ntBASIC3.92□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 RNU6-1152P-201ENST00000384576 107 ntBASIC3.92□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC3.92□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 SNORD11-201ENST00000459124 84 ntBASIC3.92□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 RNU7-57P-201ENST00000459540 60 ntBASIC3.92□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 RPS27P29-201ENST00000463110 252 ntBASIC3.92□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 AC010531.2-201ENST00000465012 153 ntBASIC3.92□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 AC078918.1-201ENST00000498515 228 ntBASIC3.92□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 MIR449C-201ENST00000516047 92 ntBASIC3.92□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 RNA5SP236-201ENST00000516169 116 ntBASIC3.92□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 RNU6-365P-201ENST00000517113 106 ntBASIC3.92□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 AC007751.1-201ENST00000529260 376 ntBASIC3.92□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 AL137067.1-201ENST00000615933 120 ntBASIC3.92□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 AC134878.1-201ENST00000619901 243 ntBASIC3.92□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 AL035470.1-201ENST00000622571 220 ntBASIC3.92□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 RNY1P7-201ENST00000384743 110 ntBASIC3.91□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 MIR607-201ENST00000385241 96 ntBASIC3.91□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 MIR518E-201ENST00000385252 88 ntBASIC3.91□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 MIR300-201ENST00000401138 83 ntBASIC3.91□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 AL672296.1-201ENST00000427780 2158 ntBASIC3.91□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 VDAC1P3-201ENST00000434069 851 ntBASIC3.91□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 snoU13.18-201ENST00000459483 104 ntBASIC3.91□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 AC080013.2-201ENST00000460866 323 ntBASIC3.91□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 AP004217.1-201ENST00000480579 346 ntBASIC3.91□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 RN7SL633P-201ENST00000488974 297 ntBASIC3.91□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 OR9P1P-201ENST00000496431 281 ntBASIC3.91□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 KRTAP13-6P-201ENST00000508999 371 ntBASIC3.91□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 ATP5EP1-201ENST00000510257 156 ntBASIC3.91□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 RNU6ATAC17P-201ENST00000516074 71 ntBASIC3.91□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 RNU5F-4P-201ENST00000516581 114 ntBASIC3.91□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 RNU6-63P-201ENST00000516690 95 ntBASIC3.91□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 MIR4644-201ENST00000579929 84 ntBASIC3.91□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 HMGN2P15-201ENST00000585707 270 ntBASIC3.91□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 AL929325.1-201ENST00000603096 117 ntBASIC3.91□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
SENP3-EIF4A1A0A087X0R7 MIR147B-201ENST00000390185 80 ntBASIC3.9□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RNA5SP511-201ENST00000410487 115 ntBASIC3.9□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RN7SKP220-201ENST00000410611 288 ntBASIC3.9□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RNU6-592P-201ENST00000411333 103 ntBASIC3.9□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3.9□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 AC078817.1-201ENST00000492623 435 ntBASIC3.9□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RNA5SP309-201ENST00000516670 106 ntBASIC3.9□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RNU7-149P-201ENST00000516739 59 ntBASIC3.9□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 AC015720.1-201ENST00000565251 277 ntBASIC3.9□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 MIR5047-201ENST00000579212 100 ntBASIC3.9□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 SNORD115-40-201ENST00000606510 82 ntBASIC3.9□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC3.9□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 AC006435.5-201ENST00000624486 112 ntBASIC3.9□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.9□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 snoU2_19.1-201ENST00000362361 80 ntBASIC3.89□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RNY4P6-201ENST00000363667 96 ntBASIC3.89□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RNA5SP167-201ENST00000365461 116 ntBASIC3.89□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 MIR562-201ENST00000384894 95 ntBASIC3.89□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 SNORA12-201ENST00000391162 147 ntBASIC3.89□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.89□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 AP000873.1-201ENST00000463987 400 ntBASIC3.89□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RNU6-504P-201ENST00000516568 104 ntBASIC3.89□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 MIR4753-201ENST00000585119 83 ntBASIC3.89□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.89□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 Y_RNA.66-201ENST00000362862 102 ntBASIC3.88□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 Y_RNA.78-201ENST00000362970 110 ntBASIC3.88□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RNU6-1292P-201ENST00000383856 107 ntBASIC3.88□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RNU1-57P-201ENST00000384491 166 ntBASIC3.88□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 MIR590-201ENST00000385008 97 ntBASIC3.88□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 MIR1283-1-201ENST00000408494 87 ntBASIC3.88□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.88□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RNA5SP129-201ENST00000410276 118 ntBASIC3.88□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RN7SKP192-201ENST00000411291 327 ntBASIC3.88□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 MTATP8P2-201ENST00000435212 202 ntBASIC3.88□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RNU6-221P-201ENST00000459541 99 ntBASIC3.88□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.88□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 HSPE1P7-201ENST00000604681 321 ntBASIC3.88□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 AC107294.3-201ENST00000609211 526 ntBASIC3.88□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 AC002064.3-201ENST00000623448 346 ntBASIC3.88□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.87□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RNA5SP325-201ENST00000363756 130 ntBASIC3.87□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 Y_RNA.486-201ENST00000384398 107 ntBASIC3.87□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RNA5SP354-201ENST00000391247 136 ntBASIC3.87□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 AC018634.1-201ENST00000437554 401 ntBASIC3.87□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 AC011753.1-201ENST00000451001 220 ntBASIC3.87□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 SCGB1D5P-201ENST00000515134 247 ntBASIC3.87□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RNU6-109P-201ENST00000516364 107 ntBASIC3.87□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 RNU6-184P-201ENST00000516514 107 ntBASIC3.87□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 AC027419.1-201ENST00000522976 328 ntBASIC3.87□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 MIR5009-201ENST00000578736 100 ntBASIC3.87□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 MIR3129-201ENST00000581095 76 ntBASIC3.87□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC3.87□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 MALAT1.1-201ENST00000618249 95 ntBASIC3.87□□□□□ -1.79
SENP3-EIF4A1A0A087X0R7 MIR7153-201ENST00000637758 57 ntBASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 178.2 ms