Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AL358944.1-201ENST00000528537 144 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 AL121579.1-201ENST00000555129 305 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 MTND1P15-201ENST00000579262 949 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 AC027279.3-201ENST00000625055 122 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 RNU6-727P-201ENST00000363592 107 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 RNY3P3-201ENST00000363816 102 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 SNORD116-11-201ENST00000383882 92 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 UBE2V1P7-201ENST00000446395 340 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 PCNPP5-201ENST00000452246 481 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 RNU6-256P-201ENST00000516747 97 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 MIR4273-201ENST00000582824 84 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 AC010525.2-201ENST00000590920 195 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 PRELID3BP2-201ENST00000605362 201 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 AC073349.3-201ENST00000617616 186 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.51□□□□□ -2.33
SHANK3Q9BYB0 Y_RNA.359-201ENST00000365498 102 ntBASIC0.51□□□□□ -2.33
SHANK3Q9BYB0 RNU6-483P-201ENST00000384088 108 ntBASIC0.51□□□□□ -2.33
SHANK3Q9BYB0 STAG3L5P-204ENST00000443759 179 ntBASIC0.51□□□□□ -2.33
SHANK3Q9BYB0 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC0.51□□□□□ -2.33
SHANK3Q9BYB0 SNORD5.1-201ENST00000458800 75 ntBASIC0.51□□□□□ -2.33
SHANK3Q9BYB0 RPS26P48-201ENST00000491713 339 ntBASIC0.51□□□□□ -2.33
SHANK3Q9BYB0 RNA5SP20-201ENST00000515976 84 ntBASIC0.51□□□□□ -2.33
SHANK3Q9BYB0 RNU6-835P-201ENST00000516974 104 ntBASIC0.51□□□□□ -2.33
SHANK3Q9BYB0 AC090142.3-201ENST00000519012 385 ntBASIC0.51□□□□□ -2.33
SHANK3Q9BYB0 IGLVI-20-201ENST00000519296 130 ntBASIC0.51□□□□□ -2.33
SHANK3Q9BYB0 FRG2DP-202ENST00000566967 323 ntBASIC0.51□□□□□ -2.33
SHANK3Q9BYB0 AL138726.1-201ENST00000614873 333 ntBASIC0.51□□□□□ -2.33
SHANK3Q9BYB0 MIR1321-201ENST00000637766 79 ntBASIC0.51□□□□□ -2.33
SHANK3Q9BYB0 CASC19-280ENST00000642102 1351 ntBASIC0.51□□□□□ -2.33
SHANK3Q9BYB0 Y_RNA.256-201ENST00000364594 104 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 MIR487A-201ENST00000385009 80 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 AC005002.2-201ENST00000438228 269 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 RPL30P10-201ENST00000488148 337 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 AC046134.1-201ENST00000514454 666 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 RNA5SP255-201ENST00000516370 107 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 Y_RNA.683-201ENST00000516508 93 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 RNU6-314P-201ENST00000516574 104 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 RNU6-922P-201ENST00000516753 99 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 RNU7-128P-201ENST00000517247 62 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 AP002004.2-201ENST00000531656 154 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 AK6P2-201ENST00000549020 471 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 MIR3611-201ENST00000584484 83 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 AC068647.2-201ENST00000637380 353 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 Y_RNA.402-201ENST00000383972 102 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 RNU6-1013P-201ENST00000384180 107 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 SNORD116-1-201ENST00000384335 95 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 U8.16-201ENST00000391279 133 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 AF228730.1-201ENST00000397972 663 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 RNA5SP475-201ENST00000410568 110 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 RNU2-64P-201ENST00000411315 191 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 AC114482.1-201ENST00000418010 247 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 RPL30P16-201ENST00000419341 429 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 MTND3P23-201ENST00000431980 347 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 FABP5P4-201ENST00000437203 171 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 MTATP6P13-201ENST00000438531 667 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 Z98949.2-201ENST00000440996 144 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 RNU7-66P-201ENST00000459469 62 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 PSMC1P5-201ENST00000512850 177 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 RNU7-172P-201ENST00000517125 64 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 AC134698.4-201ENST00000523451 826 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 AC023157.2-201ENST00000540596 141 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 MTND3P12-201ENST00000559068 328 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 AC025627.3-201ENST00000582078 182 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 Pinc.1-201ENST00000616452 154 ntBASIC0.5□□□□□ -2.33
SHANK3Q9BYB0 ZNF299P-201ENST00000406845 1804 ntBASIC0.49□□□□□ -2.33
SHANK3Q9BYB0 MIR410-201ENST00000362222 80 ntBASIC0.49□□□□□ -2.33
SHANK3Q9BYB0 Y_RNA.415-201ENST00000384012 112 ntBASIC0.49□□□□□ -2.33
SHANK3Q9BYB0 SNORA50A-201ENST00000384225 134 ntBASIC0.49□□□□□ -2.33
SHANK3Q9BYB0 RNU6-1145P-201ENST00000384246 107 ntBASIC0.49□□□□□ -2.33
SHANK3Q9BYB0 MIR100-201ENST00000385259 80 ntBASIC0.49□□□□□ -2.33
SHANK3Q9BYB0 MIR942-201ENST00000401111 86 ntBASIC0.49□□□□□ -2.33
SHANK3Q9BYB0 AL355796.1-201ENST00000406706 323 ntBASIC0.49□□□□□ -2.33
SHANK3Q9BYB0 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.49□□□□□ -2.33
SHANK3Q9BYB0 Y_RNA.665-201ENST00000516177 98 ntBASIC0.49□□□□□ -2.33
SHANK3Q9BYB0 Y_RNA.706-201ENST00000516933 99 ntBASIC0.49□□□□□ -2.33
SHANK3Q9BYB0 AC106800.4-201ENST00000614905 153 ntBASIC0.49□□□□□ -2.33
SHANK3Q9BYB0 DLEU2_5.1-201ENST00000615567 84 ntBASIC0.49□□□□□ -2.33
SHANK3Q9BYB0 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.48□□□□□ -2.33
SHANK3Q9BYB0 RNU6-595P-201ENST00000363944 107 ntBASIC0.48□□□□□ -2.33
SHANK3Q9BYB0 SNORD95.1-201ENST00000364099 68 ntBASIC0.48□□□□□ -2.33
SHANK3Q9BYB0 RNU6-376P-201ENST00000384731 106 ntBASIC0.48□□□□□ -2.33
SHANK3Q9BYB0 AC002429.1-201ENST00000437672 148 ntBASIC0.48□□□□□ -2.33
SHANK3Q9BYB0 OR9P1P-201ENST00000496431 281 ntBASIC0.48□□□□□ -2.33
SHANK3Q9BYB0 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.48□□□□□ -2.33
SHANK3Q9BYB0 RNU6-1281P-201ENST00000516223 105 ntBASIC0.48□□□□□ -2.33
SHANK3Q9BYB0 RNU6-566P-201ENST00000516790 107 ntBASIC0.48□□□□□ -2.33
SHANK3Q9BYB0 MTRNR2L2-201ENST00000604882 87 ntBASIC0.48□□□□□ -2.33
SHANK3Q9BYB0 AC004832.4-201ENST00000608952 331 ntBASIC0.48□□□□□ -2.33
SHANK3Q9BYB0 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.48□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 177.4 ms