Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC024614.2-201ENST00000577584 372 ntBASIC1.56□□□□□ -2.16
NKX3-1Q99801 MIR3145-201ENST00000580727 82 ntBASIC1.56□□□□□ -2.16
NKX3-1Q99801 AC022217.4-201ENST00000604389 163 ntBASIC1.56□□□□□ -2.16
NKX3-1Q99801 Y_RNA.812-201ENST00000610788 101 ntBASIC1.56□□□□□ -2.16
NKX3-1Q99801 Y_RNA.784-201ENST00000613803 101 ntBASIC1.56□□□□□ -2.16
NKX3-1Q99801 Y_RNA.787-201ENST00000616522 101 ntBASIC1.56□□□□□ -2.16
NKX3-1Q99801 Y_RNA.780-201ENST00000617336 101 ntBASIC1.56□□□□□ -2.16
NKX3-1Q99801 Y_RNA.801-201ENST00000619005 101 ntBASIC1.56□□□□□ -2.16
NKX3-1Q99801 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.56□□□□□ -2.16
NKX3-1Q99801 Y_RNA.64-201ENST00000362845 102 ntBASIC1.55□□□□□ -2.16
NKX3-1Q99801 SNORA63-201ENST00000363450 132 ntBASIC1.55□□□□□ -2.16
NKX3-1Q99801 SNORA63C-201ENST00000364578 129 ntBASIC1.55□□□□□ -2.16
NKX3-1Q99801 Y_RNA.380-201ENST00000365663 111 ntBASIC1.55□□□□□ -2.16
NKX3-1Q99801 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.55□□□□□ -2.16
NKX3-1Q99801 AC117470.1-201ENST00000381974 330 ntBASIC1.55□□□□□ -2.16
NKX3-1Q99801 RNU6-505P-201ENST00000384427 107 ntBASIC1.55□□□□□ -2.16
NKX3-1Q99801 MIR215-201ENST00000384858 110 ntBASIC1.55□□□□□ -2.16
NKX3-1Q99801 SNORD115-46-201ENST00000390982 71 ntBASIC1.55□□□□□ -2.16
NKX3-1Q99801 Y_RNA.602-201ENST00000410535 92 ntBASIC1.55□□□□□ -2.16
NKX3-1Q99801 HSPE1P9-201ENST00000440046 311 ntBASIC1.55□□□□□ -2.16
NKX3-1Q99801 MTATP8P1-201ENST00000467115 207 ntBASIC1.55□□□□□ -2.16
NKX3-1Q99801 RPS26P55-201ENST00000471178 356 ntBASIC1.55□□□□□ -2.16
NKX3-1Q99801 RPS26P45-201ENST00000471748 340 ntBASIC1.55□□□□□ -2.16
NKX3-1Q99801 AC097462.1-201ENST00000514125 324 ntBASIC1.55□□□□□ -2.16
NKX3-1Q99801 RNY3P15-201ENST00000516297 97 ntBASIC1.55□□□□□ -2.16
NKX3-1Q99801 AC015712.3-201ENST00000559380 164 ntBASIC1.55□□□□□ -2.16
NKX3-1Q99801 MIR4769-201ENST00000584126 77 ntBASIC1.55□□□□□ -2.16
NKX3-1Q99801 AC073413.2-201ENST00000604332 360 ntBASIC1.55□□□□□ -2.16
NKX3-1Q99801 AC006435.5-201ENST00000624486 112 ntBASIC1.55□□□□□ -2.16
NKX3-1Q99801 AC099654.10-201ENST00000640395 161 ntBASIC1.55□□□□□ -2.16
NKX3-1Q99801 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.55□□□□□ -2.16
NKX3-1Q99801 SNORD113-8-201ENST00000363497 74 ntBASIC1.54□□□□□ -2.16
NKX3-1Q99801 RNU6-770P-201ENST00000363929 105 ntBASIC1.54□□□□□ -2.16
NKX3-1Q99801 RNA5SP99-201ENST00000364020 114 ntBASIC1.54□□□□□ -2.16
NKX3-1Q99801 Y_RNA.222-201ENST00000364264 102 ntBASIC1.54□□□□□ -2.16
NKX3-1Q99801 RNU6-117P-201ENST00000365415 107 ntBASIC1.54□□□□□ -2.16
NKX3-1Q99801 MIR606-201ENST00000384851 96 ntBASIC1.54□□□□□ -2.16
NKX3-1Q99801 MIR520A-201ENST00000384862 85 ntBASIC1.54□□□□□ -2.16
NKX3-1Q99801 MIR9-3-201ENST00000385084 90 ntBASIC1.54□□□□□ -2.16
NKX3-1Q99801 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
NKX3-1Q99801 RPL21P1-201ENST00000399532 476 ntBASIC1.54□□□□□ -2.16
NKX3-1Q99801 AL590004.1-201ENST00000405321 300 ntBASIC1.54□□□□□ -2.16
NKX3-1Q99801 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.54□□□□□ -2.16
NKX3-1Q99801 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.54□□□□□ -2.16
NKX3-1Q99801 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.54□□□□□ -2.16
NKX3-1Q99801 AC010154.1-201ENST00000425857 269 ntBASIC1.54□□□□□ -2.16
NKX3-1Q99801 AC005042.3-201ENST00000453230 174 ntBASIC1.54□□□□□ -2.16
NKX3-1Q99801 LINC01399-202ENST00000458450 244 ntBASIC1.54□□□□□ -2.16
NKX3-1Q99801 snoU13.23-201ENST00000458863 104 ntBASIC1.54□□□□□ -2.16
NKX3-1Q99801 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.54□□□□□ -2.16
NKX3-1Q99801 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.54□□□□□ -2.16
NKX3-1Q99801 AC024995.1-201ENST00000523014 93 ntBASIC1.54□□□□□ -2.16
NKX3-1Q99801 AC110588.1-201ENST00000559699 137 ntBASIC1.54□□□□□ -2.16
NKX3-1Q99801 MIR3684-201ENST00000579779 74 ntBASIC1.54□□□□□ -2.16
NKX3-1Q99801 MIR3618-201ENST00000580330 88 ntBASIC1.54□□□□□ -2.16
NKX3-1Q99801 DEFB117-201ENST00000602356 141 ntBASIC1.54□□□□□ -2.16
NKX3-1Q99801 AL355297.3-201ENST00000604082 446 ntBASIC1.54□□□□□ -2.16
NKX3-1Q99801 AC103810.8-201ENST00000607347 118 ntBASIC1.54□□□□□ -2.16
NKX3-1Q99801 MIR376A1-201ENST00000616574 68 ntBASIC1.54□□□□□ -2.16
NKX3-1Q99801 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.54□□□□□ -2.16
NKX3-1Q99801 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.54□□□□□ -2.16
NKX3-1Q99801 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.54□□□□□ -2.16
NKX3-1Q99801 ZNF355P-201ENST00000427301 3216 ntBASIC1.53□□□□□ -2.16
NKX3-1Q99801 Y_RNA.19-201ENST00000362462 99 ntBASIC1.53□□□□□ -2.16
NKX3-1Q99801 SNORD116-13-201ENST00000384408 92 ntBASIC1.53□□□□□ -2.16
NKX3-1Q99801 Y_RNA.512-201ENST00000384518 102 ntBASIC1.53□□□□□ -2.16
NKX3-1Q99801 RNU6-1160P-201ENST00000384546 104 ntBASIC1.53□□□□□ -2.16
NKX3-1Q99801 RNA5SP511-201ENST00000410487 115 ntBASIC1.53□□□□□ -2.16
NKX3-1Q99801 RNU2-7P-201ENST00000410794 178 ntBASIC1.53□□□□□ -2.16
NKX3-1Q99801 RNU2-61P-201ENST00000411069 191 ntBASIC1.53□□□□□ -2.16
NKX3-1Q99801 RPL23AP36-201ENST00000413895 458 ntBASIC1.53□□□□□ -2.16
NKX3-1Q99801 RPL21P38-201ENST00000418090 167 ntBASIC1.53□□□□□ -2.16
NKX3-1Q99801 RPL31P63-201ENST00000422565 375 ntBASIC1.53□□□□□ -2.16
NKX3-1Q99801 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.53□□□□□ -2.16
NKX3-1Q99801 MRPS35P2-201ENST00000508242 191 ntBASIC1.53□□□□□ -2.16
NKX3-1Q99801 AC107393.1-201ENST00000512403 346 ntBASIC1.53□□□□□ -2.16
NKX3-1Q99801 SCARNA15.1-201ENST00000516384 125 ntBASIC1.53□□□□□ -2.16
NKX3-1Q99801 SNORA31.10-201ENST00000516482 106 ntBASIC1.53□□□□□ -2.16
NKX3-1Q99801 RNU6-1337P-201ENST00000516525 95 ntBASIC1.53□□□□□ -2.16
NKX3-1Q99801 Y_RNA.713-201ENST00000517013 96 ntBASIC1.53□□□□□ -2.16
NKX3-1Q99801 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.53□□□□□ -2.16
NKX3-1Q99801 AC007742.2-201ENST00000618226 398 ntBASIC1.53□□□□□ -2.16
NKX3-1Q99801 AC127459.3-201ENST00000624328 466 ntBASIC1.53□□□□□ -2.16
NKX3-1Q99801 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.53□□□□□ -2.16
NKX3-1Q99801 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.52□□□□□ -2.17
NKX3-1Q99801 RNA5SP432-201ENST00000362480 116 ntBASIC1.52□□□□□ -2.17
NKX3-1Q99801 snoU2_19.2-201ENST00000363024 80 ntBASIC1.52□□□□□ -2.17
NKX3-1Q99801 MIR515-2-201ENST00000384883 83 ntBASIC1.52□□□□□ -2.17
NKX3-1Q99801 MIR515-1-201ENST00000384884 83 ntBASIC1.52□□□□□ -2.17
NKX3-1Q99801 HSPE1P25-201ENST00000455484 251 ntBASIC1.52□□□□□ -2.17
NKX3-1Q99801 AC091021.1-201ENST00000468051 388 ntBASIC1.52□□□□□ -2.17
NKX3-1Q99801 RNU6-496P-201ENST00000516145 99 ntBASIC1.52□□□□□ -2.17
NKX3-1Q99801 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.52□□□□□ -2.17
NKX3-1Q99801 MIR4713-201ENST00000582691 75 ntBASIC1.52□□□□□ -2.17
NKX3-1Q99801 MIR8081-201ENST00000611533 95 ntBASIC1.52□□□□□ -2.17
NKX3-1Q99801 MIR6845-201ENST00000613182 61 ntBASIC1.52□□□□□ -2.17
NKX3-1Q99801 AL353997.5-201ENST00000618886 171 ntBASIC1.52□□□□□ -2.17
NKX3-1Q99801 AC092881.1-201ENST00000638218 2733 ntBASIC1.52□□□□□ -2.17
NKX3-1Q99801 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
NKX3-1Q99801 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 164.1 ms