Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.05□□□□□ -2.24
CCDC43Q96MW1 AL020996.3-201ENST00000606617 222 ntBASIC1.05□□□□□ -2.24
CCDC43Q96MW1 AC009229.3-201ENST00000608056 282 ntBASIC1.05□□□□□ -2.24
CCDC43Q96MW1 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.04□□□□□ -2.24
CCDC43Q96MW1 Y_RNA.191-201ENST00000363972 113 ntBASIC1.04□□□□□ -2.24
CCDC43Q96MW1 RNU4-41P-201ENST00000364426 143 ntBASIC1.04□□□□□ -2.24
CCDC43Q96MW1 SNORD116-4-201ENST00000384733 96 ntBASIC1.04□□□□□ -2.24
CCDC43Q96MW1 MIR499A-201ENST00000384903 122 ntBASIC1.04□□□□□ -2.24
CCDC43Q96MW1 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.04□□□□□ -2.24
CCDC43Q96MW1 SNORA40.9-201ENST00000515895 93 ntBASIC1.04□□□□□ -2.24
CCDC43Q96MW1 RNU6-63P-201ENST00000516690 95 ntBASIC1.04□□□□□ -2.24
CCDC43Q96MW1 RNU6-1096P-201ENST00000517089 102 ntBASIC1.04□□□□□ -2.24
CCDC43Q96MW1 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.04□□□□□ -2.24
CCDC43Q96MW1 MIR4661-201ENST00000582720 75 ntBASIC1.04□□□□□ -2.24
CCDC43Q96MW1 AC093783.1-201ENST00000612976 329 ntBASIC1.04□□□□□ -2.24
CCDC43Q96MW1 SNORA80D-201ENST00000384488 135 ntBASIC1.03□□□□□ -2.24
CCDC43Q96MW1 RNU6-601P-201ENST00000384540 107 ntBASIC1.03□□□□□ -2.24
CCDC43Q96MW1 MIR532-201ENST00000385025 91 ntBASIC1.03□□□□□ -2.24
CCDC43Q96MW1 MIR520G-201ENST00000385064 90 ntBASIC1.03□□□□□ -2.24
CCDC43Q96MW1 MTND3P8-201ENST00000412909 339 ntBASIC1.03□□□□□ -2.24
CCDC43Q96MW1 RPS26P48-201ENST00000491713 339 ntBASIC1.03□□□□□ -2.24
CCDC43Q96MW1 SCARNA16.2-201ENST00000516520 172 ntBASIC1.03□□□□□ -2.24
CCDC43Q96MW1 AC136932.1-201ENST00000574771 208 ntBASIC1.03□□□□□ -2.24
CCDC43Q96MW1 FAM106DP-201ENST00000586416 501 ntBASIC1.03□□□□□ -2.24
CCDC43Q96MW1 AC005828.6-201ENST00000606610 232 ntBASIC1.03□□□□□ -2.24
CCDC43Q96MW1 MIR6504-201ENST00000613520 61 ntBASIC1.03□□□□□ -2.24
CCDC43Q96MW1 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
CCDC43Q96MW1 MIR1277-201ENST00000408536 78 ntBASIC1.02□□□□□ -2.25
CCDC43Q96MW1 AC114482.1-201ENST00000418010 247 ntBASIC1.02□□□□□ -2.25
CCDC43Q96MW1 MTND3P10-201ENST00000450967 341 ntBASIC1.02□□□□□ -2.25
CCDC43Q96MW1 AC107399.1-201ENST00000451226 265 ntBASIC1.02□□□□□ -2.25
CCDC43Q96MW1 LINC01399-202ENST00000458450 244 ntBASIC1.02□□□□□ -2.25
CCDC43Q96MW1 ACA64.5-201ENST00000516207 127 ntBASIC1.02□□□□□ -2.25
CCDC43Q96MW1 AF235103.2-201ENST00000525753 346 ntBASIC1.02□□□□□ -2.25
CCDC43Q96MW1 AC002553.4-201ENST00000616896 331 ntBASIC1.02□□□□□ -2.25
CCDC43Q96MW1 AC008163.1-202ENST00000636004 2889 ntBASIC1.02□□□□□ -2.25
CCDC43Q96MW1 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.02□□□□□ -2.25
CCDC43Q96MW1 MIR96-201ENST00000362288 78 ntBASIC1.01□□□□□ -2.25
CCDC43Q96MW1 SNORD114-24-201ENST00000365029 72 ntBASIC1.01□□□□□ -2.25
CCDC43Q96MW1 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
CCDC43Q96MW1 Y_RNA.404-201ENST00000383978 102 ntBASIC1.01□□□□□ -2.25
CCDC43Q96MW1 MIR526A1-201ENST00000384897 85 ntBASIC1.01□□□□□ -2.25
CCDC43Q96MW1 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.01□□□□□ -2.25
CCDC43Q96MW1 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.01□□□□□ -2.25
CCDC43Q96MW1 AL358944.1-201ENST00000528537 144 ntBASIC1.01□□□□□ -2.25
CCDC43Q96MW1 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.01□□□□□ -2.25
CCDC43Q96MW1 MIR6857-201ENST00000613267 93 ntBASIC1.01□□□□□ -2.25
CCDC43Q96MW1 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
CCDC43Q96MW1 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1□□□□□ -2.25
CCDC43Q96MW1 Y_RNA.224-201ENST00000364308 111 ntBASIC1□□□□□ -2.25
CCDC43Q96MW1 Y_RNA.238-201ENST00000364441 102 ntBASIC1□□□□□ -2.25
CCDC43Q96MW1 Y_RNA.243-201ENST00000364481 109 ntBASIC1□□□□□ -2.25
CCDC43Q96MW1 Y_RNA.339-201ENST00000365325 102 ntBASIC1□□□□□ -2.25
CCDC43Q96MW1 Y_RNA.482-201ENST00000384377 111 ntBASIC1□□□□□ -2.25
CCDC43Q96MW1 MIR891A-201ENST00000401237 79 ntBASIC1□□□□□ -2.25
CCDC43Q96MW1 SNORD12B-201ENST00000410433 91 ntBASIC1□□□□□ -2.25
CCDC43Q96MW1 RPL23AP50-201ENST00000434149 455 ntBASIC1□□□□□ -2.25
CCDC43Q96MW1 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1□□□□□ -2.25
CCDC43Q96MW1 AC011352.1-201ENST00000512300 793 ntBASIC1□□□□□ -2.25
CCDC43Q96MW1 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC1□□□□□ -2.25
CCDC43Q96MW1 AC136443.5-201ENST00000603741 370 ntBASIC1□□□□□ -2.25
CCDC43Q96MW1 AL096861.1-201ENST00000610899 123 ntBASIC1□□□□□ -2.25
CCDC43Q96MW1 MIR1244-1-201ENST00000612829 85 ntBASIC1□□□□□ -2.25
CCDC43Q96MW1 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1□□□□□ -2.25
CCDC43Q96MW1 PISRT1.1-201ENST00000616930 107 ntBASIC1□□□□□ -2.25
CCDC43Q96MW1 AC092794.2-201ENST00000620933 563 ntBASIC1□□□□□ -2.25
CCDC43Q96MW1 MIR1244-3-201ENST00000635744 85 ntBASIC1□□□□□ -2.25
CCDC43Q96MW1 MIR1244-2-201ENST00000636449 85 ntBASIC1□□□□□ -2.25
CCDC43Q96MW1 MIR1244-4-202ENST00000636813 85 ntBASIC1□□□□□ -2.25
CCDC43Q96MW1 RNU6-1187P-201ENST00000364771 110 ntBASIC0.99□□□□□ -2.25
CCDC43Q96MW1 RNU1-36P-201ENST00000365130 165 ntBASIC0.99□□□□□ -2.25
CCDC43Q96MW1 RNU6-969P-201ENST00000383900 105 ntBASIC0.99□□□□□ -2.25
CCDC43Q96MW1 RNU6-1310P-201ENST00000384153 107 ntBASIC0.99□□□□□ -2.25
CCDC43Q96MW1 RNU6-163P-201ENST00000384396 106 ntBASIC0.99□□□□□ -2.25
CCDC43Q96MW1 RNA5SP511-201ENST00000410487 115 ntBASIC0.99□□□□□ -2.25
CCDC43Q96MW1 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.99□□□□□ -2.25
CCDC43Q96MW1 SUMO1P2-201ENST00000452524 304 ntBASIC0.99□□□□□ -2.25
CCDC43Q96MW1 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.99□□□□□ -2.25
CCDC43Q96MW1 PDCD5P2-201ENST00000507570 312 ntBASIC0.99□□□□□ -2.25
CCDC43Q96MW1 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.99□□□□□ -2.25
CCDC43Q96MW1 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC0.99□□□□□ -2.25
CCDC43Q96MW1 AC005899.2-201ENST00000584353 90 ntBASIC0.99□□□□□ -2.25
CCDC43Q96MW1 AC068790.6-201ENST00000602558 258 ntBASIC0.99□□□□□ -2.25
CCDC43Q96MW1 PRELID3BP2-201ENST00000605362 201 ntBASIC0.99□□□□□ -2.25
CCDC43Q96MW1 RNU6-1301P-201ENST00000362724 104 ntBASIC0.98□□□□□ -2.25
CCDC43Q96MW1 RNU6-833P-201ENST00000363486 107 ntBASIC0.98□□□□□ -2.25
CCDC43Q96MW1 SNORD114-22-201ENST00000365423 72 ntBASIC0.98□□□□□ -2.25
CCDC43Q96MW1 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.98□□□□□ -2.25
CCDC43Q96MW1 POLR2J4-204ENST00000418424 324 ntBASIC0.98□□□□□ -2.25
CCDC43Q96MW1 PIGPP3-201ENST00000425307 415 ntBASIC0.98□□□□□ -2.25
CCDC43Q96MW1 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.98□□□□□ -2.25
CCDC43Q96MW1 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.98□□□□□ -2.25
CCDC43Q96MW1 MIR4452-201ENST00000583004 71 ntBASIC0.98□□□□□ -2.25
CCDC43Q96MW1 AC211469.2-201ENST00000605461 205 ntBASIC0.98□□□□□ -2.25
CCDC43Q96MW1 AC004832.4-201ENST00000608952 331 ntBASIC0.98□□□□□ -2.25
CCDC43Q96MW1 AC007014.2-201ENST00000615581 479 ntBASIC0.98□□□□□ -2.25
CCDC43Q96MW1 Y_RNA.88-201ENST00000363029 99 ntBASIC0.97□□□□□ -2.25
CCDC43Q96MW1 SNORD68-201ENST00000363214 84 ntBASIC0.97□□□□□ -2.25
CCDC43Q96MW1 Y_RNA.621-201ENST00000411065 96 ntBASIC0.97□□□□□ -2.25
CCDC43Q96MW1 AL354751.2-201ENST00000415471 210 ntBASIC0.97□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 174.9 ms