Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AL773524.1-201ENST00000614065 229 ntBASIC2.04□□□□□ -2.08
CCDC28AQ8IWP9 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.04□□□□□ -2.08
CCDC28AQ8IWP9 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
CCDC28AQ8IWP9 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.03□□□□□ -2.08
CCDC28AQ8IWP9 Y_RNA.416-201ENST00000384014 113 ntBASIC2.03□□□□□ -2.08
CCDC28AQ8IWP9 Y_RNA.478-201ENST00000384358 107 ntBASIC2.03□□□□□ -2.08
CCDC28AQ8IWP9 RNU6-950P-201ENST00000384651 107 ntBASIC2.03□□□□□ -2.08
CCDC28AQ8IWP9 RNU6-763P-201ENST00000390865 106 ntBASIC2.03□□□□□ -2.08
CCDC28AQ8IWP9 AL603910.2-201ENST00000407268 136 ntBASIC2.03□□□□□ -2.08
CCDC28AQ8IWP9 RNA5SP338-201ENST00000410495 85 ntBASIC2.03□□□□□ -2.08
CCDC28AQ8IWP9 AC244636.1-201ENST00000421152 228 ntBASIC2.03□□□□□ -2.08
CCDC28AQ8IWP9 RPS27P1-201ENST00000450552 247 ntBASIC2.03□□□□□ -2.08
CCDC28AQ8IWP9 RNA5SP437-201ENST00000517249 129 ntBASIC2.03□□□□□ -2.08
CCDC28AQ8IWP9 AL162424.1-201ENST00000602325 221 ntBASIC2.03□□□□□ -2.08
CCDC28AQ8IWP9 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.03□□□□□ -2.08
CCDC28AQ8IWP9 AP003357.1-201ENST00000604497 148 ntBASIC2.03□□□□□ -2.08
CCDC28AQ8IWP9 AC093732.2-201ENST00000607950 274 ntBASIC2.03□□□□□ -2.08
CCDC28AQ8IWP9 MIR548AY-201ENST00000617669 107 ntBASIC2.03□□□□□ -2.08
CCDC28AQ8IWP9 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.03□□□□□ -2.08
CCDC28AQ8IWP9 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.02□□□□□ -2.09
CCDC28AQ8IWP9 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.54-201ENST00000362766 105 ntBASIC2.02□□□□□ -2.09
CCDC28AQ8IWP9 RNU6-899P-201ENST00000363947 107 ntBASIC2.02□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.267-201ENST00000364679 109 ntBASIC2.02□□□□□ -2.09
CCDC28AQ8IWP9 RNU6-740P-201ENST00000364734 105 ntBASIC2.02□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.307-201ENST00000365022 117 ntBASIC2.02□□□□□ -2.09
CCDC28AQ8IWP9 SNORA72-201ENST00000384339 132 ntBASIC2.02□□□□□ -2.09
CCDC28AQ8IWP9 RNU6-1289P-201ENST00000384431 106 ntBASIC2.02□□□□□ -2.09
CCDC28AQ8IWP9 SNORA26.5-201ENST00000391215 123 ntBASIC2.02□□□□□ -2.09
CCDC28AQ8IWP9 RNU2-14P-201ENST00000411053 191 ntBASIC2.02□□□□□ -2.09
CCDC28AQ8IWP9 BTF3P11-201ENST00000426582 477 ntBASIC2.02□□□□□ -2.09
CCDC28AQ8IWP9 AC087499.2-201ENST00000432861 149 ntBASIC2.02□□□□□ -2.09
CCDC28AQ8IWP9 AL606517.2-201ENST00000442855 241 ntBASIC2.02□□□□□ -2.09
CCDC28AQ8IWP9 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.02□□□□□ -2.09
CCDC28AQ8IWP9 RNU7-141P-201ENST00000459304 62 ntBASIC2.02□□□□□ -2.09
CCDC28AQ8IWP9 RPL23AP63-201ENST00000498752 471 ntBASIC2.02□□□□□ -2.09
CCDC28AQ8IWP9 RNU7-115P-201ENST00000516433 55 ntBASIC2.02□□□□□ -2.09
CCDC28AQ8IWP9 SNORA31.17-201ENST00000516953 127 ntBASIC2.02□□□□□ -2.09
CCDC28AQ8IWP9 AL358944.1-201ENST00000528537 144 ntBASIC2.02□□□□□ -2.09
CCDC28AQ8IWP9 POLR3GP1-201ENST00000594073 261 ntBASIC2.02□□□□□ -2.09
CCDC28AQ8IWP9 AC010900.2-201ENST00000604508 210 ntBASIC2.02□□□□□ -2.09
CCDC28AQ8IWP9 AC100821.1-201ENST00000523153 2479 ntBASIC2.02□□□□□ -2.09
CCDC28AQ8IWP9 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.01□□□□□ -2.09
CCDC28AQ8IWP9 RNU6-1048P-201ENST00000364054 107 ntBASIC2.01□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.447-201ENST00000384184 113 ntBASIC2.01□□□□□ -2.09
CCDC28AQ8IWP9 RPL23AP6-201ENST00000446637 472 ntBASIC2.01□□□□□ -2.09
CCDC28AQ8IWP9 AC117454.1-201ENST00000491120 168 ntBASIC2.01□□□□□ -2.09
CCDC28AQ8IWP9 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC28AQ8IWP9 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.01□□□□□ -2.09
CCDC28AQ8IWP9 RNA5SP282-201ENST00000516355 108 ntBASIC2.01□□□□□ -2.09
CCDC28AQ8IWP9 RNU6-1291P-201ENST00000516591 104 ntBASIC2.01□□□□□ -2.09
CCDC28AQ8IWP9 AP002004.2-201ENST00000531656 154 ntBASIC2.01□□□□□ -2.09
CCDC28AQ8IWP9 AC024405.2-202ENST00000532731 184 ntBASIC2.01□□□□□ -2.09
CCDC28AQ8IWP9 AC011604.1-201ENST00000545978 196 ntBASIC2.01□□□□□ -2.09
CCDC28AQ8IWP9 AC127455.1-201ENST00000565496 145 ntBASIC2.01□□□□□ -2.09
CCDC28AQ8IWP9 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC28AQ8IWP9 BX284668.6-201ENST00000606899 438 ntBASIC2.01□□□□□ -2.09
CCDC28AQ8IWP9 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.01□□□□□ -2.09
CCDC28AQ8IWP9 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2□□□□□ -2.09
CCDC28AQ8IWP9 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2□□□□□ -2.09
CCDC28AQ8IWP9 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.82-201ENST00000363000 102 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.92-201ENST00000363043 102 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.235-201ENST00000364412 102 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 U8.7-201ENST00000364940 136 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.306-201ENST00000365015 102 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.312-201ENST00000365089 102 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.322-201ENST00000365151 102 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 MTCO2P33-201ENST00000402100 465 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 AC233266.1-201ENST00000454518 96 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.650-201ENST00000459002 102 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 U8.19-201ENST00000459095 133 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.637-201ENST00000459424 114 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 RNU6-1023P-201ENST00000516137 106 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 RNU2-56P-201ENST00000516826 190 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.777-201ENST00000516982 102 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC2□□□□□ -2.09
CCDC28AQ8IWP9 MIR4299-201ENST00000577899 72 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 MIR3128-201ENST00000581957 66 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.771-201ENST00000598668 102 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 AC242852.1-201ENST00000612151 96 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 AC013791.1-201ENST00000616619 62 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 MIR8054-201ENST00000620877 86 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 AC244015.1-201ENST00000622301 99 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.789-201ENST00000622480 102 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 snoU18.1-201ENST00000629629 71 ntBASIC2□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.20-201ENST00000362479 113 ntBASIC1.99□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.117-201ENST00000363294 101 ntBASIC1.99□□□□□ -2.09
CCDC28AQ8IWP9 RNA5SP68-201ENST00000363885 119 ntBASIC1.99□□□□□ -2.09
CCDC28AQ8IWP9 SNORD27-201ENST00000363981 72 ntBASIC1.99□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.277-201ENST00000364754 102 ntBASIC1.99□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.477-201ENST00000384352 108 ntBASIC1.99□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.489-201ENST00000384410 101 ntBASIC1.99□□□□□ -2.09
CCDC28AQ8IWP9 MIR491-201ENST00000384877 84 ntBASIC1.99□□□□□ -2.09
CCDC28AQ8IWP9 Y_RNA.590-201ENST00000410140 107 ntBASIC1.99□□□□□ -2.09
CCDC28AQ8IWP9 HSPE1P9-201ENST00000440046 311 ntBASIC1.99□□□□□ -2.09
CCDC28AQ8IWP9 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.99□□□□□ -2.09
CCDC28AQ8IWP9 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC1.99□□□□□ -2.09
CCDC28AQ8IWP9 MTND1P19-201ENST00000511780 315 ntBASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 210.5 ms