Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC0.56□□□□□ -2.32
SHANK3Q9BYB0 SNORD79.1-201ENST00000516069 84 ntBASIC0.56□□□□□ -2.32
SHANK3Q9BYB0 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.56□□□□□ -2.32
SHANK3Q9BYB0 MIR3672-201ENST00000584290 82 ntBASIC0.56□□□□□ -2.32
SHANK3Q9BYB0 AC097065.2-201ENST00000608159 533 ntBASIC0.56□□□□□ -2.32
SHANK3Q9BYB0 AC019193.3-201ENST00000609144 554 ntBASIC0.56□□□□□ -2.32
SHANK3Q9BYB0 RNU4-76P-201ENST00000364509 141 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 SNORA80D-201ENST00000384488 135 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 MIR514A2-201ENST00000385131 88 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 MIR514A3-201ENST00000385132 88 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 RNU6-332P-201ENST00000391193 108 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 RNA5SP482-201ENST00000391269 118 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 MIR891A-201ENST00000401237 79 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 AC016909.1-201ENST00000415916 166 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 AC063976.4-201ENST00000421971 163 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 MTCO3P18-201ENST00000440206 761 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 MTND1P11-201ENST00000456661 876 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 AC010469.2-201ENST00000496412 480 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 AC105758.1-201ENST00000506038 399 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 AC093303.1-201ENST00000514549 295 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 SNORA31.2-201ENST00000516019 134 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 RNA5SP454-201ENST00000517231 127 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 AL590705.4-201ENST00000532209 134 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 AC027288.2-201ENST00000553028 243 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 Z99129.1-201ENST00000612510 255 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 SNORD114-7-201ENST00000362520 77 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 Y_RNA.100-201ENST00000363141 102 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 RNU6-833P-201ENST00000363486 107 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 SNORA33-201ENST00000363664 130 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 Y_RNA.530-201ENST00000384587 101 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 RNU6-373P-201ENST00000411247 98 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 AC097462.1-201ENST00000514125 324 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 AL512360.1-201ENST00000555346 234 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 MIR3684-201ENST00000579779 74 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 AL359880.1-201ENST00000621879 266 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 AC097520.1-201ENST00000624435 385 ntBASIC0.55□□□□□ -2.32
SHANK3Q9BYB0 RNU6-522P-201ENST00000364497 107 ntBASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 Y_RNA.265-201ENST00000364677 108 ntBASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 SNORA2.2-201ENST00000365473 135 ntBASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 RNU6-793P-201ENST00000384233 104 ntBASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 Y_RNA.571-201ENST00000384753 98 ntBASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 RNU6-700P-201ENST00000391043 107 ntBASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 MTCO3P40-201ENST00000392516 676 ntBASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 RNA5SP266-201ENST00000410273 108 ntBASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 AC243428.1-201ENST00000421099 264 ntBASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 RNU7-90P-201ENST00000459216 62 ntBASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 RPS27P22-201ENST00000478056 241 ntBASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 AC107401.1-201ENST00000503426 685 ntBASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 RNU6-1278P-201ENST00000516130 107 ntBASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 Y_RNA.693-201ENST00000516641 110 ntBASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 RNU4-77P-201ENST00000516692 156 ntBASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 RNU6-341P-201ENST00000516973 96 ntBASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 RNU1-117P-201ENST00000517041 158 ntBASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 UBL5P4-201ENST00000562584 236 ntBASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 AC124303.1-201ENST00000605703 360 ntBASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 AL021879.1-201ENST00000611756 288 ntBASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 AC010999.1-201ENST00000611856 324 ntBASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 AC106754.2-201ENST00000623006 233 ntBASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC0.54□□□□□ -2.32
SHANK3Q9BYB0 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.53□□□□□ -2.32
SHANK3Q9BYB0 SNORD87-201ENST00000364849 89 ntBASIC0.53□□□□□ -2.32
SHANK3Q9BYB0 Y_RNA.409-201ENST00000383990 98 ntBASIC0.53□□□□□ -2.32
SHANK3Q9BYB0 RNU6-281P-201ENST00000384212 103 ntBASIC0.53□□□□□ -2.32
SHANK3Q9BYB0 RNU6-424P-201ENST00000384367 105 ntBASIC0.53□□□□□ -2.32
SHANK3Q9BYB0 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC0.53□□□□□ -2.32
SHANK3Q9BYB0 MTND3P21-201ENST00000433774 331 ntBASIC0.53□□□□□ -2.32
SHANK3Q9BYB0 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC0.53□□□□□ -2.32
SHANK3Q9BYB0 AL049830.1-201ENST00000468034 425 ntBASIC0.53□□□□□ -2.32
SHANK3Q9BYB0 AC019235.1-201ENST00000503847 207 ntBASIC0.53□□□□□ -2.32
SHANK3Q9BYB0 AC010598.1-201ENST00000510378 103 ntBASIC0.53□□□□□ -2.32
SHANK3Q9BYB0 ACA64.5-201ENST00000516207 127 ntBASIC0.53□□□□□ -2.32
SHANK3Q9BYB0 RNU6-947P-201ENST00000516264 106 ntBASIC0.53□□□□□ -2.32
SHANK3Q9BYB0 AP002001.1-203ENST00000534002 267 ntBASIC0.53□□□□□ -2.32
SHANK3Q9BYB0 MIR5695-201ENST00000579717 85 ntBASIC0.53□□□□□ -2.32
SHANK3Q9BYB0 MIR5190-201ENST00000581537 80 ntBASIC0.53□□□□□ -2.32
SHANK3Q9BYB0 AC092954.2-201ENST00000609103 430 ntBASIC0.53□□□□□ -2.32
SHANK3Q9BYB0 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC0.53□□□□□ -2.32
SHANK3Q9BYB0 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.53□□□□□ -2.33
SHANK3Q9BYB0 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.53□□□□□ -2.33
SHANK3Q9BYB0 RNU4-79P-201ENST00000362764 141 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 Y_RNA.184-201ENST00000363884 108 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 RNU4-20P-201ENST00000365601 151 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 MIR10B-201ENST00000385011 110 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 RNA5SP504-201ENST00000410676 117 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 AC006461.1-201ENST00000412637 326 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 MTCO3P19-201ENST00000415864 321 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 Z82188.1-201ENST00000436709 154 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 AC093019.1-201ENST00000443135 252 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 MTND1P1-201ENST00000445453 368 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 RNU7-12P-201ENST00000516030 62 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 RNA5SP168-201ENST00000516642 112 ntBASIC0.52□□□□□ -2.33
SHANK3Q9BYB0 AC136628.3-201ENST00000521868 290 ntBASIC0.52□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 176.4 ms