Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SNORD45.4-201ENST00000516629 73 ntBASIC4.08□□□□□ -1.76
COL9A1P20849 RNU6-1006P-201ENST00000516998 103 ntBASIC4.08□□□□□ -1.76
COL9A1P20849 AC025627.2-201ENST00000576220 160 ntBASIC4.08□□□□□ -1.76
COL9A1P20849 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.08□□□□□ -1.76
COL9A1P20849 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL9A1P20849 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL9A1P20849 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL9A1P20849 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL9A1P20849 BCLAF1P1-201ENST00000505813 2752 ntBASIC4.07□□□□□ -1.76
COL9A1P20849 SNORA60-201ENST00000362396 134 ntBASIC4.07□□□□□ -1.76
COL9A1P20849 Y_RNA.430-201ENST00000384081 110 ntBASIC4.07□□□□□ -1.76
COL9A1P20849 SNORA54-201ENST00000384281 123 ntBASIC4.07□□□□□ -1.76
COL9A1P20849 Y_RNA.467-201ENST00000384297 102 ntBASIC4.07□□□□□ -1.76
COL9A1P20849 RNY1P4-201ENST00000384595 115 ntBASIC4.07□□□□□ -1.76
COL9A1P20849 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC4.07□□□□□ -1.76
COL9A1P20849 SNX2P2-201ENST00000424553 323 ntBASIC4.07□□□□□ -1.76
COL9A1P20849 RPL29P14-201ENST00000495837 428 ntBASIC4.07□□□□□ -1.76
COL9A1P20849 AL353149.1-201ENST00000610667 244 ntBASIC4.07□□□□□ -1.76
COL9A1P20849 MIR7106-201ENST00000612419 65 ntBASIC4.07□□□□□ -1.76
COL9A1P20849 AL162274.2-201ENST00000614406 332 ntBASIC4.07□□□□□ -1.76
COL9A1P20849 AC021613.1-201ENST00000623880 111 ntBASIC4.07□□□□□ -1.76
COL9A1P20849 U6.108-201ENST00000637764 58 ntBASIC4.07□□□□□ -1.76
COL9A1P20849 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
COL9A1P20849 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL9A1P20849 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL9A1P20849 MIR340-201ENST00000362125 95 ntBASIC4.06□□□□□ -1.76
COL9A1P20849 MIR342-201ENST00000362212 99 ntBASIC4.06□□□□□ -1.76
COL9A1P20849 RNU6-509P-201ENST00000363519 107 ntBASIC4.06□□□□□ -1.76
COL9A1P20849 SNORD58A-201ENST00000383875 65 ntBASIC4.06□□□□□ -1.76
COL9A1P20849 SNORD77B-201ENST00000391112 67 ntBASIC4.06□□□□□ -1.76
COL9A1P20849 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC4.06□□□□□ -1.76
COL9A1P20849 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
COL9A1P20849 RNU7-96P-201ENST00000459535 64 ntBASIC4.06□□□□□ -1.76
COL9A1P20849 S100A11P2-201ENST00000467589 312 ntBASIC4.06□□□□□ -1.76
COL9A1P20849 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC4.06□□□□□ -1.76
COL9A1P20849 RNU7-143P-201ENST00000516781 65 ntBASIC4.06□□□□□ -1.76
COL9A1P20849 SCARNA3-201ENST00000517097 143 ntBASIC4.06□□□□□ -1.76
COL9A1P20849 AL137849.1-201ENST00000604767 169 ntBASIC4.06□□□□□ -1.76
COL9A1P20849 MIR338-201ENST00000636369 67 ntBASIC4.06□□□□□ -1.76
COL9A1P20849 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL9A1P20849 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL9A1P20849 NEAT1-202ENST00000501122 22743 ntBASIC4.06□□□□□ -1.76
COL9A1P20849 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.06□□□□□ -1.76
COL9A1P20849 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL9A1P20849 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.06□□□□□ -1.76
COL9A1P20849 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC4.05□□□□□ -1.76
COL9A1P20849 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL9A1P20849 AL355596.1-201ENST00000565399 3996 ntBASIC4.05□□□□□ -1.76
COL9A1P20849 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.05□□□□□ -1.76
COL9A1P20849 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL9A1P20849 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL9A1P20849 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL9A1P20849 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.05□□□□□ -1.76
COL9A1P20849 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
COL9A1P20849 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.05□□□□□ -1.76
COL9A1P20849 SNORD35B-201ENST00000363660 87 ntBASIC4.05□□□□□ -1.76
COL9A1P20849 SNORA27-201ENST00000384323 126 ntBASIC4.05□□□□□ -1.76
COL9A1P20849 SNORA80E-201ENST00000384744 137 ntBASIC4.05□□□□□ -1.76
COL9A1P20849 MIR515-2-201ENST00000384883 83 ntBASIC4.05□□□□□ -1.76
COL9A1P20849 MIR515-1-201ENST00000384884 83 ntBASIC4.05□□□□□ -1.76
COL9A1P20849 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC4.05□□□□□ -1.76
COL9A1P20849 AL357552.1-201ENST00000445254 415 ntBASIC4.05□□□□□ -1.76
COL9A1P20849 AL109933.2-201ENST00000452651 260 ntBASIC4.05□□□□□ -1.76
COL9A1P20849 RNA5SP179-201ENST00000517284 121 ntBASIC4.05□□□□□ -1.76
COL9A1P20849 HNRNPDLP4-201ENST00000605144 301 ntBASIC4.05□□□□□ -1.76
COL9A1P20849 MIR548BB-201ENST00000626714 66 ntBASIC4.05□□□□□ -1.76
COL9A1P20849 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL9A1P20849 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
COL9A1P20849 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL9A1P20849 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL9A1P20849 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
COL9A1P20849 AC139713.2-215ENST00000641428 5037 ntBASIC4.04□□□□□ -1.76
COL9A1P20849 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.04□□□□□ -1.76
COL9A1P20849 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL9A1P20849 RNA5SP323-201ENST00000391094 133 ntBASIC4.04□□□□□ -1.76
COL9A1P20849 MIR1271-201ENST00000408537 86 ntBASIC4.04□□□□□ -1.76
COL9A1P20849 AL161788.1-201ENST00000441805 169 ntBASIC4.04□□□□□ -1.76
COL9A1P20849 RNU6-998P-201ENST00000515894 101 ntBASIC4.04□□□□□ -1.76
COL9A1P20849 SNORA31.1-201ENST00000515993 133 ntBASIC4.04□□□□□ -1.76
COL9A1P20849 SNORA31.5-201ENST00000516190 133 ntBASIC4.04□□□□□ -1.76
COL9A1P20849 AC091167.4-201ENST00000605079 184 ntBASIC4.04□□□□□ -1.76
COL9A1P20849 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL9A1P20849 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL9A1P20849 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.04□□□□□ -1.76
COL9A1P20849 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.04□□□□□ -1.76
COL9A1P20849 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL9A1P20849 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL9A1P20849 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL9A1P20849 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL9A1P20849 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL9A1P20849 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL9A1P20849 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL9A1P20849 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.03□□□□□ -1.76
COL9A1P20849 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
COL9A1P20849 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC4.03□□□□□ -1.76
COL9A1P20849 RNU1-33P-201ENST00000364249 162 ntBASIC4.03□□□□□ -1.76
COL9A1P20849 RNA5SP97-201ENST00000365006 84 ntBASIC4.03□□□□□ -1.76
COL9A1P20849 U8.15-201ENST00000390947 134 ntBASIC4.03□□□□□ -1.76
COL9A1P20849 POLR2J4-204ENST00000418424 324 ntBASIC4.03□□□□□ -1.76
COL9A1P20849 AC003685.2-201ENST00000422795 395 ntBASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 205.6 ms