Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL9A1P20849 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL9A1P20849 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
COL9A1P20849 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL9A1P20849 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.19□□□□□ -1.74
COL9A1P20849 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL9A1P20849 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL9A1P20849 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.19□□□□□ -1.74
COL9A1P20849 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL9A1P20849 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.18□□□□□ -1.74
COL9A1P20849 Y_RNA.95-201ENST00000363079 95 ntBASIC4.18□□□□□ -1.74
COL9A1P20849 RNA5SP50-201ENST00000363731 107 ntBASIC4.18□□□□□ -1.74
COL9A1P20849 SNORA80A-201ENST00000363922 136 ntBASIC4.18□□□□□ -1.74
COL9A1P20849 RNU6-268P-201ENST00000364174 107 ntBASIC4.18□□□□□ -1.74
COL9A1P20849 RNU6-1083P-201ENST00000384022 107 ntBASIC4.18□□□□□ -1.74
COL9A1P20849 MIR490-201ENST00000384865 128 ntBASIC4.18□□□□□ -1.74
COL9A1P20849 AL022718.1-201ENST00000412004 84 ntBASIC4.18□□□□□ -1.74
COL9A1P20849 AC123900.1-201ENST00000420390 96 ntBASIC4.18□□□□□ -1.74
COL9A1P20849 AL035398.1-201ENST00000430869 322 ntBASIC4.18□□□□□ -1.74
COL9A1P20849 AL049830.1-201ENST00000468034 425 ntBASIC4.18□□□□□ -1.74
COL9A1P20849 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.18□□□□□ -1.74
COL9A1P20849 AP002004.2-201ENST00000531656 154 ntBASIC4.18□□□□□ -1.74
COL9A1P20849 MIR4668-201ENST00000582284 70 ntBASIC4.18□□□□□ -1.74
COL9A1P20849 MIR548Z-201ENST00000584743 97 ntBASIC4.18□□□□□ -1.74
COL9A1P20849 AC064859.1-201ENST00000624741 174 ntBASIC4.18□□□□□ -1.74
COL9A1P20849 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.18□□□□□ -1.74
COL9A1P20849 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.18□□□□□ -1.74
COL9A1P20849 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL9A1P20849 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.18□□□□□ -1.74
COL9A1P20849 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.18□□□□□ -1.74
COL9A1P20849 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
COL9A1P20849 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL9A1P20849 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL9A1P20849 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
COL9A1P20849 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL9A1P20849 snoU2-30.2-201ENST00000362805 70 ntBASIC4.17□□□□□ -1.74
COL9A1P20849 RNU1-105P-201ENST00000363470 161 ntBASIC4.17□□□□□ -1.74
COL9A1P20849 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
COL9A1P20849 RNA5SP38-201ENST00000410750 119 ntBASIC4.17□□□□□ -1.74
COL9A1P20849 AC006011.1-201ENST00000442758 349 ntBASIC4.17□□□□□ -1.74
COL9A1P20849 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC4.17□□□□□ -1.74
COL9A1P20849 RN7SKP18-201ENST00000516005 275 ntBASIC4.17□□□□□ -1.74
COL9A1P20849 AC087499.8-201ENST00000578406 226 ntBASIC4.17□□□□□ -1.74
COL9A1P20849 MIR4762-201ENST00000585261 75 ntBASIC4.17□□□□□ -1.74
COL9A1P20849 Y_RNA.773-201ENST00000607168 90 ntBASIC4.17□□□□□ -1.74
COL9A1P20849 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL9A1P20849 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
COL9A1P20849 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.16□□□□□ -1.74
COL9A1P20849 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
COL9A1P20849 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL9A1P20849 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.16□□□□□ -1.74
COL9A1P20849 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.16□□□□□ -1.74
COL9A1P20849 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL9A1P20849 MAPK10-303ENST00000641324 3959 ntBASIC4.16□□□□□ -1.74
COL9A1P20849 MIR605-201ENST00000385078 83 ntBASIC4.16□□□□□ -1.74
COL9A1P20849 MIR767-201ENST00000390228 109 ntBASIC4.16□□□□□ -1.74
COL9A1P20849 MIR1251-201ENST00000408552 70 ntBASIC4.16□□□□□ -1.74
COL9A1P20849 RNA5SP144-201ENST00000410846 116 ntBASIC4.16□□□□□ -1.74
COL9A1P20849 AC060773.1-201ENST00000421698 310 ntBASIC4.16□□□□□ -1.74
COL9A1P20849 SNRPGP14-201ENST00000435400 219 ntBASIC4.16□□□□□ -1.74
COL9A1P20849 AC107083.1-201ENST00000439643 279 ntBASIC4.16□□□□□ -1.74
COL9A1P20849 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC4.16□□□□□ -1.74
COL9A1P20849 RPS12P18-201ENST00000442381 270 ntBASIC4.16□□□□□ -1.74
COL9A1P20849 AC093259.1-201ENST00000509755 300 ntBASIC4.16□□□□□ -1.74
COL9A1P20849 RNU6-965P-201ENST00000516721 96 ntBASIC4.16□□□□□ -1.74
COL9A1P20849 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC4.16□□□□□ -1.74
COL9A1P20849 MIR4325-201ENST00000583049 90 ntBASIC4.16□□□□□ -1.74
COL9A1P20849 YPEL5P2-201ENST00000605553 359 ntBASIC4.16□□□□□ -1.74
COL9A1P20849 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL9A1P20849 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL9A1P20849 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.16□□□□□ -1.74
COL9A1P20849 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL9A1P20849 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.74
COL9A1P20849 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.15□□□□□ -1.74
COL9A1P20849 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.15□□□□□ -1.74
COL9A1P20849 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
COL9A1P20849 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
COL9A1P20849 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.15□□□□□ -1.74
COL9A1P20849 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.74
COL9A1P20849 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.74
COL9A1P20849 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
COL9A1P20849 AC008264.2-201ENST00000610193 3731 ntBASIC4.15□□□□□ -1.74
COL9A1P20849 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.74
COL9A1P20849 SNORD116-10-201ENST00000363791 102 ntBASIC4.15□□□□□ -1.75
COL9A1P20849 snoU2-30.1-201ENST00000365012 70 ntBASIC4.15□□□□□ -1.75
COL9A1P20849 Y_RNA.336-201ENST00000365307 109 ntBASIC4.15□□□□□ -1.75
COL9A1P20849 RN7SKP200-201ENST00000410564 320 ntBASIC4.15□□□□□ -1.75
COL9A1P20849 AC244505.4-201ENST00000434905 287 ntBASIC4.15□□□□□ -1.75
COL9A1P20849 AC009969.1-201ENST00000438726 172 ntBASIC4.15□□□□□ -1.75
COL9A1P20849 SSXP5-201ENST00000443473 287 ntBASIC4.15□□□□□ -1.75
COL9A1P20849 RNU7-94P-201ENST00000459576 63 ntBASIC4.15□□□□□ -1.75
COL9A1P20849 AC004812.1-201ENST00000540773 146 ntBASIC4.15□□□□□ -1.75
COL9A1P20849 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC4.15□□□□□ -1.75
COL9A1P20849 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL9A1P20849 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL9A1P20849 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL9A1P20849 RNU6-1084P-201ENST00000362498 107 ntBASIC4.14□□□□□ -1.75
COL9A1P20849 SNORA5B-201ENST00000363786 132 ntBASIC4.14□□□□□ -1.75
COL9A1P20849 U8.5-201ENST00000364528 136 ntBASIC4.14□□□□□ -1.75
COL9A1P20849 RNU4-16P-201ENST00000364737 141 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 242.4 ms