Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RNA5SP219-201ENST00000390940 113 ntBASIC0.68□□□□□ -2.3
SHANK3Q9BYB0 SNORD37.1-201ENST00000390968 65 ntBASIC0.68□□□□□ -2.3
SHANK3Q9BYB0 AC092447.3-201ENST00000426027 686 ntBASIC0.68□□□□□ -2.3
SHANK3Q9BYB0 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC0.68□□□□□ -2.3
SHANK3Q9BYB0 RNU6-1208P-201ENST00000459588 107 ntBASIC0.68□□□□□ -2.3
SHANK3Q9BYB0 RPL39P38-201ENST00000467018 153 ntBASIC0.68□□□□□ -2.3
SHANK3Q9BYB0 AC104692.1-201ENST00000472406 90 ntBASIC0.68□□□□□ -2.3
SHANK3Q9BYB0 SNORA31.4-201ENST00000516049 129 ntBASIC0.68□□□□□ -2.3
SHANK3Q9BYB0 AC015688.6-201ENST00000577737 104 ntBASIC0.68□□□□□ -2.3
SHANK3Q9BYB0 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC0.68□□□□□ -2.3
SHANK3Q9BYB0 AC008088.1-201ENST00000580993 280 ntBASIC0.68□□□□□ -2.3
SHANK3Q9BYB0 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.68□□□□□ -2.3
SHANK3Q9BYB0 AC007684.1-201ENST00000609671 477 ntBASIC0.68□□□□□ -2.3
SHANK3Q9BYB0 AC063944.3-201ENST00000609969 533 ntBASIC0.68□□□□□ -2.3
SHANK3Q9BYB0 AC006001.4-201ENST00000622243 395 ntBASIC0.68□□□□□ -2.3
SHANK3Q9BYB0 AL078596.1-201ENST00000624856 447 ntBASIC0.68□□□□□ -2.3
SHANK3Q9BYB0 MIR5087-201ENST00000635826 76 ntBASIC0.68□□□□□ -2.3
SHANK3Q9BYB0 RNU6-1305P-201ENST00000364353 104 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 SNORD116-8-201ENST00000384365 95 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 MIR1185-2-201ENST00000408687 86 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 HMGN2P34-201ENST00000437647 269 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 AC012557.2-201ENST00000605919 418 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 RNU6-89P-201ENST00000606519 100 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 AP001330.5-201ENST00000607176 411 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 AC021506.2-201ENST00000612354 169 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 AC012676.2-201ENST00000619258 186 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 AC139792.3-201ENST00000623525 224 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 ZNF204P-201ENST00000416749 2397 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 Y_RNA.123-201ENST00000363338 102 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 Y_RNA.378-201ENST00000365652 113 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 RNU6-128P-201ENST00000383976 107 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 RNU6-38P-201ENST00000384085 107 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 RNU6-325P-201ENST00000411132 105 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 AL606490.4-201ENST00000423117 127 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 SRRM1P2-201ENST00000464531 1192 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 AC083798.1-201ENST00000472671 131 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 MTCO1P29-201ENST00000496868 288 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 CCDC34P1-201ENST00000507441 517 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 RNU6-758P-201ENST00000516292 89 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 SNORA25.14-201ENST00000516481 132 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 Y_RNA.717-201ENST00000517106 92 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 AC025647.1-201ENST00000517879 253 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 MIR4723-201ENST00000585070 81 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 AC022432.1-201ENST00000595739 310 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 MIR8054-201ENST00000620877 86 ntBASIC0.67□□□□□ -2.3
SHANK3Q9BYB0 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 MIR19B1-201ENST00000384829 87 ntBASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 MIR92A1-201ENST00000385233 78 ntBASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 MIR548B-201ENST00000385247 97 ntBASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 MIR450B-201ENST00000401182 78 ntBASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 RNU6-57P-201ENST00000411348 103 ntBASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 AC008134.1-201ENST00000420943 193 ntBASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 RNU6-956P-201ENST00000458868 103 ntBASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 RPS3AP17-201ENST00000472594 777 ntBASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 AF186996.7-201ENST00000492781 209 ntBASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 AC091133.4-201ENST00000511142 308 ntBASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 RNU6-322P-201ENST00000516010 103 ntBASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 RNU6-1332P-201ENST00000516666 104 ntBASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 DEFB131C-201ENST00000528817 165 ntBASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 MIR5583-1-201ENST00000580941 59 ntBASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 SNORD11B-201ENST00000607707 90 ntBASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 AC092807.2-201ENST00000609367 243 ntBASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 GHRLOS.1-201ENST00000610995 70 ntBASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 RMST_3.1-201ENST00000611651 109 ntBASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 FER-210ENST00000628534 558 ntTSL 5 BASIC0.66□□□□□ -2.3
SHANK3Q9BYB0 SNORD113-7-201ENST00000363762 77 ntBASIC0.65□□□□□ -2.31
SHANK3Q9BYB0 SNORA75-201ENST00000384158 137 ntBASIC0.65□□□□□ -2.31
SHANK3Q9BYB0 MIR653-201ENST00000385279 96 ntBASIC0.65□□□□□ -2.31
SHANK3Q9BYB0 RNU6-440P-201ENST00000390882 105 ntBASIC0.65□□□□□ -2.31
SHANK3Q9BYB0 AL590002.1-201ENST00000406554 418 ntBASIC0.65□□□□□ -2.31
SHANK3Q9BYB0 AC004866.1-201ENST00000411748 78 ntBASIC0.65□□□□□ -2.31
SHANK3Q9BYB0 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.65□□□□□ -2.31
SHANK3Q9BYB0 DYNLT3P2-201ENST00000442517 295 ntBASIC0.65□□□□□ -2.31
SHANK3Q9BYB0 RNU7-99P-201ENST00000516271 62 ntBASIC0.65□□□□□ -2.31
SHANK3Q9BYB0 AC004817.2-201ENST00000561794 651 ntBASIC0.65□□□□□ -2.31
SHANK3Q9BYB0 MIR5696-201ENST00000578474 85 ntBASIC0.65□□□□□ -2.31
SHANK3Q9BYB0 AL929325.1-201ENST00000603096 117 ntBASIC0.65□□□□□ -2.31
SHANK3Q9BYB0 AC121247.2-201ENST00000604776 136 ntBASIC0.65□□□□□ -2.31
SHANK3Q9BYB0 AL022345.2-201ENST00000606307 135 ntBASIC0.65□□□□□ -2.31
SHANK3Q9BYB0 AC073114.1-201ENST00000612027 490 ntBASIC0.65□□□□□ -2.31
SHANK3Q9BYB0 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC0.65□□□□□ -2.31
SHANK3Q9BYB0 MIR6863-201ENST00000636112 90 ntBASIC0.65□□□□□ -2.31
SHANK3Q9BYB0 SNORD115-32-201ENST00000364079 82 ntBASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 201.9 ms