Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 Y_RNA.216-201ENST00000364205 93 ntBASIC1.81□□□□□ -2.12
NKX3-1Q99801 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
NKX3-1Q99801 AL023284.1-201ENST00000403956 276 ntBASIC1.81□□□□□ -2.12
NKX3-1Q99801 MIR1283-2-201ENST00000408621 87 ntBASIC1.81□□□□□ -2.12
NKX3-1Q99801 SNORA11.4-201ENST00000408823 129 ntBASIC1.81□□□□□ -2.12
NKX3-1Q99801 RN7SKP192-201ENST00000411291 327 ntBASIC1.81□□□□□ -2.12
NKX3-1Q99801 AL139156.1-201ENST00000412785 841 ntBASIC1.81□□□□□ -2.12
NKX3-1Q99801 RPS20P15-201ENST00000412792 311 ntBASIC1.81□□□□□ -2.12
NKX3-1Q99801 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
NKX3-1Q99801 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.81□□□□□ -2.12
NKX3-1Q99801 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.81□□□□□ -2.12
NKX3-1Q99801 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.81□□□□□ -2.12
NKX3-1Q99801 YWHAEP4-201ENST00000505390 198 ntBASIC1.81□□□□□ -2.12
NKX3-1Q99801 AC144568.1-201ENST00000520139 137 ntBASIC1.81□□□□□ -2.12
NKX3-1Q99801 AC104984.5-201ENST00000586878 94 ntBASIC1.81□□□□□ -2.12
NKX3-1Q99801 CYP2C61P-201ENST00000604072 290 ntBASIC1.81□□□□□ -2.12
NKX3-1Q99801 SNORD58B-201ENST00000607313 66 ntBASIC1.81□□□□□ -2.12
NKX3-1Q99801 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.81□□□□□ -2.12
NKX3-1Q99801 SNORD11B-201ENST00000607707 90 ntBASIC1.81□□□□□ -2.12
NKX3-1Q99801 AC006157.1-201ENST00000611750 366 ntBASIC1.81□□□□□ -2.12
NKX3-1Q99801 U2.1-201ENST00000618978 145 ntBASIC1.81□□□□□ -2.12
NKX3-1Q99801 AC022140.2-201ENST00000623500 188 ntBASIC1.81□□□□□ -2.12
NKX3-1Q99801 MIR4272-201ENST00000635924 64 ntBASIC1.81□□□□□ -2.12
NKX3-1Q99801 AC068205.3-201ENST00000636385 468 ntBASIC1.81□□□□□ -2.12
NKX3-1Q99801 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.81□□□□□ -2.12
NKX3-1Q99801 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
NKX3-1Q99801 LINC02555-201ENST00000563933 1951 ntBASIC1.81□□□□□ -2.12
NKX3-1Q99801 Y_RNA.112-201ENST00000363250 102 ntBASIC1.8□□□□□ -2.12
NKX3-1Q99801 MIR586-201ENST00000385035 97 ntBASIC1.8□□□□□ -2.12
NKX3-1Q99801 MIR300-201ENST00000401138 83 ntBASIC1.8□□□□□ -2.12
NKX3-1Q99801 RN7SKP223-201ENST00000410582 62 ntBASIC1.8□□□□□ -2.12
NKX3-1Q99801 AL354751.2-201ENST00000415471 210 ntBASIC1.8□□□□□ -2.12
NKX3-1Q99801 MTCO2P12-201ENST00000427426 682 ntBASIC1.8□□□□□ -2.12
NKX3-1Q99801 AL160004.2-201ENST00000432935 350 ntBASIC1.8□□□□□ -2.12
NKX3-1Q99801 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.8□□□□□ -2.12
NKX3-1Q99801 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.8□□□□□ -2.12
NKX3-1Q99801 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.8□□□□□ -2.12
NKX3-1Q99801 AC025033.1-201ENST00000463883 194 ntBASIC1.8□□□□□ -2.12
NKX3-1Q99801 RPS29P21-201ENST00000496272 170 ntBASIC1.8□□□□□ -2.12
NKX3-1Q99801 Y_RNA.683-201ENST00000516508 93 ntBASIC1.8□□□□□ -2.12
NKX3-1Q99801 MIR514B-201ENST00000516774 80 ntBASIC1.8□□□□□ -2.12
NKX3-1Q99801 Y_RNA.701-201ENST00000516812 110 ntBASIC1.8□□□□□ -2.12
NKX3-1Q99801 RNA5SP364-201ENST00000516938 78 ntBASIC1.8□□□□□ -2.12
NKX3-1Q99801 AC091144.1-201ENST00000519573 138 ntBASIC1.8□□□□□ -2.12
NKX3-1Q99801 SNRPGP18-201ENST00000553000 214 ntBASIC1.8□□□□□ -2.12
NKX3-1Q99801 MIR3169-201ENST00000578032 83 ntBASIC1.8□□□□□ -2.12
NKX3-1Q99801 MIR4753-201ENST00000585119 83 ntBASIC1.8□□□□□ -2.12
NKX3-1Q99801 AL109918.3-201ENST00000603072 338 ntBASIC1.8□□□□□ -2.12
NKX3-1Q99801 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.8□□□□□ -2.12
NKX3-1Q99801 AL162373.1-201ENST00000620433 407 ntBASIC1.8□□□□□ -2.12
NKX3-1Q99801 AC245060.5-201ENST00000610778 3293 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 RNU6-926P-201ENST00000384075 107 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 Y_RNA.445-201ENST00000384168 102 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 RNU6-975P-201ENST00000384296 105 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 MIR17-201ENST00000385012 84 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 RNU11-3P-201ENST00000391111 133 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 U3.40-201ENST00000408706 208 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 SNORD12B-201ENST00000410433 91 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 ELOCP21-201ENST00000412558 336 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 HMGN2P3-201ENST00000433603 273 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 HMGN2P5-201ENST00000436882 273 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 AC007677.1-201ENST00000445757 515 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 AC007395.1-201ENST00000451333 677 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 RNU7-57P-201ENST00000459540 60 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 AC055731.1-201ENST00000474387 401 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 SCARNA16.3-201ENST00000516595 184 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 RNU2-19P-201ENST00000517288 84 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.79□□□□□ -2.12
NKX3-1Q99801 AC006600.1-201ENST00000572529 153 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 MIR1273D-201ENST00000577266 86 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 MIR4648-201ENST00000580107 72 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 MIR5188-201ENST00000583467 113 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 Y_RNA.783-201ENST00000613546 102 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 AC022513.1-201ENST00000624512 117 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 AL078596.1-201ENST00000624856 447 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 AC008873.1-201ENST00000625051 138 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 AC091812.1-201ENST00000432235 1948 ntBASIC1.79□□□□□ -2.12
NKX3-1Q99801 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.78□□□□□ -2.12
NKX3-1Q99801 RNU1-58P-201ENST00000362413 163 ntBASIC1.78□□□□□ -2.12
NKX3-1Q99801 SNORA67.3-201ENST00000384366 140 ntBASIC1.78□□□□□ -2.12
NKX3-1Q99801 MCFD2P1-201ENST00000417812 300 ntBASIC1.78□□□□□ -2.12
NKX3-1Q99801 UBE2V1P7-201ENST00000446395 340 ntBASIC1.78□□□□□ -2.12
NKX3-1Q99801 MTND4P19-201ENST00000446659 478 ntBASIC1.78□□□□□ -2.12
NKX3-1Q99801 AC010469.2-201ENST00000496412 480 ntBASIC1.78□□□□□ -2.12
NKX3-1Q99801 RNU6-107P-201ENST00000516643 102 ntBASIC1.78□□□□□ -2.12
NKX3-1Q99801 RN7SKP49-201ENST00000516675 260 ntBASIC1.78□□□□□ -2.12
NKX3-1Q99801 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.78□□□□□ -2.12
NKX3-1Q99801 AL442163.3-201ENST00000554110 156 ntBASIC1.78□□□□□ -2.12
NKX3-1Q99801 AC020661.2-201ENST00000560114 134 ntBASIC1.78□□□□□ -2.12
NKX3-1Q99801 MIR3124-201ENST00000582636 67 ntBASIC1.78□□□□□ -2.12
NKX3-1Q99801 AC011476.5-201ENST00000615594 130 ntBASIC1.78□□□□□ -2.12
NKX3-1Q99801 AC130454.1-201ENST00000622948 401 ntBASIC1.78□□□□□ -2.12
NKX3-1Q99801 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.78□□□□□ -2.12
NKX3-1Q99801 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.78□□□□□ -2.12
NKX3-1Q99801 Y_RNA.148-201ENST00000363557 117 ntBASIC1.77□□□□□ -2.13
NKX3-1Q99801 RNU6-694P-201ENST00000364071 147 ntBASIC1.77□□□□□ -2.13
NKX3-1Q99801 RNU6-160P-201ENST00000384591 107 ntBASIC1.77□□□□□ -2.13
NKX3-1Q99801 MIR29C-201ENST00000385231 88 ntBASIC1.77□□□□□ -2.13
NKX3-1Q99801 Y_RNA.595-201ENST00000410403 105 ntBASIC1.77□□□□□ -2.13
NKX3-1Q99801 RNA5SP450-201ENST00000411206 102 ntBASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 164.9 ms