Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 U8.11-201ENST00000384699 133 ntBASIC4.35□□□□□ -1.71
COL9A1P20849 RNU6-644P-201ENST00000391155 98 ntBASIC4.35□□□□□ -1.71
COL9A1P20849 DBIP2-201ENST00000419076 262 ntBASIC4.35□□□□□ -1.71
COL9A1P20849 U8.18-201ENST00000459285 133 ntBASIC4.35□□□□□ -1.71
COL9A1P20849 RN7SL601P-201ENST00000471221 293 ntBASIC4.35□□□□□ -1.71
COL9A1P20849 AP000867.2-201ENST00000532468 320 ntBASIC4.35□□□□□ -1.71
COL9A1P20849 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.35□□□□□ -1.71
COL9A1P20849 AC022523.2-201ENST00000561045 150 ntBASIC4.35□□□□□ -1.71
COL9A1P20849 AC103810.1-201ENST00000579873 453 ntBASIC4.35□□□□□ -1.71
COL9A1P20849 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.35□□□□□ -1.71
COL9A1P20849 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
COL9A1P20849 AC018630.2-201ENST00000534866 2403 ntBASIC4.35□□□□□ -1.71
COL9A1P20849 AC002546.1-201ENST00000588041 2504 ntBASIC4.35□□□□□ -1.71
COL9A1P20849 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.35□□□□□ -1.71
COL9A1P20849 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC4.35□□□□□ -1.71
COL9A1P20849 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.35□□□□□ -1.71
COL9A1P20849 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
COL9A1P20849 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL9A1P20849 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
COL9A1P20849 AL035425.3-201ENST00000564206 4996 ntBASIC4.34□□□□□ -1.71
COL9A1P20849 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL9A1P20849 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.34□□□□□ -1.71
COL9A1P20849 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
COL9A1P20849 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
COL9A1P20849 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL9A1P20849 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL9A1P20849 RNU6-170P-201ENST00000362832 104 ntBASIC4.34□□□□□ -1.71
COL9A1P20849 RNU6-1125P-201ENST00000363601 107 ntBASIC4.34□□□□□ -1.71
COL9A1P20849 RPL21P3-201ENST00000395517 478 ntBASIC4.34□□□□□ -1.71
COL9A1P20849 MIR1253-201ENST00000408273 105 ntBASIC4.34□□□□□ -1.71
COL9A1P20849 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC4.34□□□□□ -1.71
COL9A1P20849 SCGB1D5P-201ENST00000515134 247 ntBASIC4.34□□□□□ -1.71
COL9A1P20849 AL358944.1-201ENST00000528537 144 ntBASIC4.34□□□□□ -1.71
COL9A1P20849 AC022217.4-201ENST00000604389 163 ntBASIC4.34□□□□□ -1.71
COL9A1P20849 MIR7111-201ENST00000619751 72 ntBASIC4.34□□□□□ -1.71
COL9A1P20849 AC091905.2-201ENST00000623143 306 ntBASIC4.34□□□□□ -1.71
COL9A1P20849 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.34□□□□□ -1.71
COL9A1P20849 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.34□□□□□ -1.71
COL9A1P20849 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
COL9A1P20849 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.72
COL9A1P20849 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
COL9A1P20849 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
COL9A1P20849 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
COL9A1P20849 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.33□□□□□ -1.72
COL9A1P20849 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.33□□□□□ -1.72
COL9A1P20849 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.33□□□□□ -1.72
COL9A1P20849 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
COL9A1P20849 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL9A1P20849 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC4.33□□□□□ -1.72
COL9A1P20849 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.33□□□□□ -1.72
COL9A1P20849 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.33□□□□□ -1.72
COL9A1P20849 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
COL9A1P20849 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL9A1P20849 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL9A1P20849 RNU1-20P-201ENST00000363314 162 ntBASIC4.33□□□□□ -1.72
COL9A1P20849 Y_RNA.531-201ENST00000384589 121 ntBASIC4.33□□□□□ -1.72
COL9A1P20849 MIR802-201ENST00000390235 94 ntBASIC4.33□□□□□ -1.72
COL9A1P20849 MIR548O-201ENST00000408583 114 ntBASIC4.33□□□□□ -1.72
COL9A1P20849 Z98742.2-201ENST00000431564 187 ntBASIC4.33□□□□□ -1.72
COL9A1P20849 RPS15AP28-201ENST00000435088 386 ntBASIC4.33□□□□□ -1.72
COL9A1P20849 AC139453.2-201ENST00000487255 133 ntBASIC4.33□□□□□ -1.72
COL9A1P20849 RNU6-513P-201ENST00000516104 104 ntBASIC4.33□□□□□ -1.72
COL9A1P20849 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.33□□□□□ -1.72
COL9A1P20849 AC073413.2-201ENST00000604332 360 ntBASIC4.33□□□□□ -1.72
COL9A1P20849 AL672167.1-203ENST00000641299 2975 ntBASIC4.33□□□□□ -1.72
COL9A1P20849 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL9A1P20849 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.33□□□□□ -1.72
COL9A1P20849 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
COL9A1P20849 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.33□□□□□ -1.72
COL9A1P20849 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
COL9A1P20849 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL9A1P20849 AC008079.2-201ENST00000623543 20396 ntBASIC4.32□□□□□ -1.72
COL9A1P20849 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
COL9A1P20849 AL022322.2-201ENST00000624072 20397 ntBASIC4.32□□□□□ -1.72
COL9A1P20849 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.32□□□□□ -1.72
COL9A1P20849 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL9A1P20849 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL9A1P20849 RNU6-832P-201ENST00000363319 107 ntBASIC4.32□□□□□ -1.72
COL9A1P20849 RNU1-96P-201ENST00000364163 162 ntBASIC4.32□□□□□ -1.72
COL9A1P20849 RNU6-1274P-201ENST00000384557 107 ntBASIC4.32□□□□□ -1.72
COL9A1P20849 MIR1261-201ENST00000408659 82 ntBASIC4.32□□□□□ -1.72
COL9A1P20849 MRPL35P3-201ENST00000421557 364 ntBASIC4.32□□□□□ -1.72
COL9A1P20849 AL353689.1-201ENST00000438895 199 ntBASIC4.32□□□□□ -1.72
COL9A1P20849 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC4.32□□□□□ -1.72
COL9A1P20849 AC025750.2-201ENST00000442609 450 ntBASIC4.32□□□□□ -1.72
COL9A1P20849 AC233266.1-201ENST00000454518 96 ntBASIC4.32□□□□□ -1.72
COL9A1P20849 AC010401.1-201ENST00000463867 348 ntBASIC4.32□□□□□ -1.72
COL9A1P20849 RAC1P2-201ENST00000511164 579 ntBASIC4.32□□□□□ -1.72
COL9A1P20849 RNU6-162P-201ENST00000516228 103 ntBASIC4.32□□□□□ -1.72
COL9A1P20849 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
COL9A1P20849 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
COL9A1P20849 AC242852.1-201ENST00000612151 96 ntBASIC4.32□□□□□ -1.72
COL9A1P20849 AC244015.1-201ENST00000622301 99 ntBASIC4.32□□□□□ -1.72
COL9A1P20849 AC007546.2-201ENST00000623996 360 ntBASIC4.32□□□□□ -1.72
COL9A1P20849 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
COL9A1P20849 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL9A1P20849 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC4.32□□□□□ -1.72
COL9A1P20849 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
COL9A1P20849 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL9A1P20849 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 578.4 ms