Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 TRIAP1P1-201ENST00000427062 225 ntBASIC3.75□□□□□ -1.81
CCDC39Q9UFE4 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC39Q9UFE4 AC108081.1-201ENST00000604358 221 ntBASIC3.75□□□□□ -1.81
CCDC39Q9UFE4 uc_338.1-201ENST00000612113 180 ntBASIC3.75□□□□□ -1.81
CCDC39Q9UFE4 AL591926.4-201ENST00000616895 298 ntBASIC3.75□□□□□ -1.81
CCDC39Q9UFE4 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC39Q9UFE4 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.74□□□□□ -1.81
CCDC39Q9UFE4 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.74□□□□□ -1.81
CCDC39Q9UFE4 RNU6-799P-201ENST00000363567 107 ntBASIC3.74□□□□□ -1.81
CCDC39Q9UFE4 RNU6-727P-201ENST00000363592 107 ntBASIC3.74□□□□□ -1.81
CCDC39Q9UFE4 U8.7-201ENST00000364940 136 ntBASIC3.74□□□□□ -1.81
CCDC39Q9UFE4 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC39Q9UFE4 HSPE1P13-201ENST00000451143 297 ntBASIC3.74□□□□□ -1.81
CCDC39Q9UFE4 RNU6-772P-201ENST00000516042 105 ntBASIC3.74□□□□□ -1.81
CCDC39Q9UFE4 RNU6-561P-201ENST00000516222 102 ntBASIC3.74□□□□□ -1.81
CCDC39Q9UFE4 AC021231.3-201ENST00000558497 370 ntBASIC3.74□□□□□ -1.81
CCDC39Q9UFE4 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.74□□□□□ -1.81
CCDC39Q9UFE4 AL359198.2-201ENST00000611836 194 ntBASIC3.74□□□□□ -1.81
CCDC39Q9UFE4 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.74□□□□□ -1.81
CCDC39Q9UFE4 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC39Q9UFE4 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.74□□□□□ -1.81
CCDC39Q9UFE4 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.74□□□□□ -1.81
CCDC39Q9UFE4 MAPK10-362ENST00000641864 4484 ntBASIC3.74□□□□□ -1.81
CCDC39Q9UFE4 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC39Q9UFE4 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC39Q9UFE4 RNU6-454P-201ENST00000364292 107 ntBASIC3.73□□□□□ -1.81
CCDC39Q9UFE4 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
CCDC39Q9UFE4 SNORA72.4-201ENST00000384174 132 ntBASIC3.73□□□□□ -1.81
CCDC39Q9UFE4 MT-TT-201ENST00000387460 66 ntBASIC3.73□□□□□ -1.81
CCDC39Q9UFE4 AL355497.1-201ENST00000406262 551 ntBASIC3.73□□□□□ -1.81
CCDC39Q9UFE4 MIR1302-4-201ENST00000408701 150 ntBASIC3.73□□□□□ -1.81
CCDC39Q9UFE4 AC012306.1-201ENST00000423267 114 ntBASIC3.73□□□□□ -1.81
CCDC39Q9UFE4 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.73□□□□□ -1.81
CCDC39Q9UFE4 AC092017.2-201ENST00000427600 362 ntBASIC3.73□□□□□ -1.81
CCDC39Q9UFE4 AC078809.1-201ENST00000427601 140 ntBASIC3.73□□□□□ -1.81
CCDC39Q9UFE4 CST9LP2-201ENST00000437612 320 ntBASIC3.73□□□□□ -1.81
CCDC39Q9UFE4 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.73□□□□□ -1.81
CCDC39Q9UFE4 AC007215.1-201ENST00000464893 276 ntBASIC3.73□□□□□ -1.81
CCDC39Q9UFE4 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.73□□□□□ -1.81
CCDC39Q9UFE4 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC39Q9UFE4 NDUFA5P6-201ENST00000542110 379 ntBASIC3.73□□□□□ -1.81
CCDC39Q9UFE4 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.73□□□□□ -1.81
CCDC39Q9UFE4 MIR4276-201ENST00000584832 70 ntBASIC3.73□□□□□ -1.81
CCDC39Q9UFE4 U6.95-201ENST00000636931 70 ntBASIC3.73□□□□□ -1.81
CCDC39Q9UFE4 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC39Q9UFE4 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.73□□□□□ -1.81
CCDC39Q9UFE4 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 AC092268.1-201ENST00000342691 405 ntBASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 Y_RNA.393-201ENST00000383936 102 ntBASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 Y_RNA.521-201ENST00000384560 114 ntBASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 MIR526A2-201ENST00000390198 65 ntBASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 AIMP1P2-201ENST00000425294 312 ntBASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 MTCO1P44-201ENST00000441935 243 ntBASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 RPL23AP70-201ENST00000483361 460 ntBASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 AC006445.2-201ENST00000510061 472 ntBASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 CR383656.8-201ENST00000549046 145 ntBASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 MIR6798-201ENST00000612887 67 ntBASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 AC068647.2-201ENST00000637380 353 ntBASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC39Q9UFE4 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.81
CCDC39Q9UFE4 Z83843.1-201ENST00000604070 3685 ntBASIC3.71□□□□□ -1.82
CCDC39Q9UFE4 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
CCDC39Q9UFE4 Y_RNA.369-201ENST00000365568 117 ntBASIC3.71□□□□□ -1.82
CCDC39Q9UFE4 RNU6-245P-201ENST00000384020 107 ntBASIC3.71□□□□□ -1.82
CCDC39Q9UFE4 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.71□□□□□ -1.82
CCDC39Q9UFE4 AL606845.1-201ENST00000404881 255 ntBASIC3.71□□□□□ -1.82
CCDC39Q9UFE4 RNU6-1077P-201ENST00000410506 102 ntBASIC3.71□□□□□ -1.82
CCDC39Q9UFE4 AC244670.1-201ENST00000436879 112 ntBASIC3.71□□□□□ -1.82
CCDC39Q9UFE4 RPS27P1-201ENST00000450552 247 ntBASIC3.71□□□□□ -1.82
CCDC39Q9UFE4 RPL32P34-201ENST00000486380 400 ntBASIC3.71□□□□□ -1.82
CCDC39Q9UFE4 RNU1-103P-201ENST00000516502 125 ntBASIC3.71□□□□□ -1.82
CCDC39Q9UFE4 AL138880.2-201ENST00000616214 239 ntBASIC3.71□□□□□ -1.82
CCDC39Q9UFE4 AC012640.5-201ENST00000623897 319 ntBASIC3.71□□□□□ -1.82
CCDC39Q9UFE4 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.71□□□□□ -1.82
CCDC39Q9UFE4 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
CCDC39Q9UFE4 AL049781.1-201ENST00000623195 3585 ntBASIC3.71□□□□□ -1.82
CCDC39Q9UFE4 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC39Q9UFE4 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC39Q9UFE4 MIR325-201ENST00000385260 98 ntBASIC3.7□□□□□ -1.82
CCDC39Q9UFE4 RNU6-1228P-201ENST00000391014 107 ntBASIC3.7□□□□□ -1.82
CCDC39Q9UFE4 SNORA26.3-201ENST00000391119 136 ntBASIC3.7□□□□□ -1.82
CCDC39Q9UFE4 SNORA75.5-201ENST00000391291 81 ntBASIC3.7□□□□□ -1.82
CCDC39Q9UFE4 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC39Q9UFE4 AL714022.1-201ENST00000439897 151 ntBASIC3.7□□□□□ -1.82
CCDC39Q9UFE4 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC39Q9UFE4 CYCSP35-201ENST00000451978 304 ntBASIC3.7□□□□□ -1.82
CCDC39Q9UFE4 SNORA31.1-201ENST00000515993 133 ntBASIC3.7□□□□□ -1.82
CCDC39Q9UFE4 SNORA31.5-201ENST00000516190 133 ntBASIC3.7□□□□□ -1.82
CCDC39Q9UFE4 SNORD33.1-201ENST00000516213 88 ntBASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 167.2 ms