Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RNU6-57P-201ENST00000411348 103 ntBASIC1.74□□□□□ -2.13
CDX1P47902 AC060773.1-201ENST00000421698 310 ntBASIC1.74□□□□□ -2.13
CDX1P47902 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.74□□□□□ -2.13
CDX1P47902 MTND3P23-201ENST00000431980 347 ntBASIC1.74□□□□□ -2.13
CDX1P47902 AL353997.1-201ENST00000432936 108 ntBASIC1.74□□□□□ -2.13
CDX1P47902 AC018634.1-201ENST00000437554 401 ntBASIC1.74□□□□□ -2.13
CDX1P47902 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
CDX1P47902 RBMX2P4-201ENST00000441256 376 ntBASIC1.74□□□□□ -2.13
CDX1P47902 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.74□□□□□ -2.13
CDX1P47902 Y_RNA.635-201ENST00000459041 101 ntBASIC1.74□□□□□ -2.13
CDX1P47902 RNU6-498P-201ENST00000459468 107 ntBASIC1.74□□□□□ -2.13
CDX1P47902 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.74□□□□□ -2.13
CDX1P47902 AC011406.1-201ENST00000512440 370 ntBASIC1.74□□□□□ -2.13
CDX1P47902 RNA5SP200-201ENST00000516360 103 ntBASIC1.74□□□□□ -2.13
CDX1P47902 RNU6-307P-201ENST00000516743 106 ntBASIC1.74□□□□□ -2.13
CDX1P47902 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.74□□□□□ -2.13
CDX1P47902 AL121579.1-201ENST00000555129 305 ntBASIC1.74□□□□□ -2.13
CDX1P47902 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.74□□□□□ -2.13
CDX1P47902 MIR5695-201ENST00000579717 85 ntBASIC1.74□□□□□ -2.13
CDX1P47902 AC005899.2-201ENST00000584353 90 ntBASIC1.74□□□□□ -2.13
CDX1P47902 AC116312.1-201ENST00000606841 314 ntBASIC1.74□□□□□ -2.13
CDX1P47902 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.74□□□□□ -2.13
CDX1P47902 AC091932.3-201ENST00000624223 323 ntBASIC1.74□□□□□ -2.13
CDX1P47902 AC022513.1-201ENST00000624512 117 ntBASIC1.74□□□□□ -2.13
CDX1P47902 MTND5P6-201ENST00000422338 1798 ntBASIC1.74□□□□□ -2.13
CDX1P47902 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
CDX1P47902 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
CDX1P47902 Y_RNA.106-201ENST00000363189 100 ntBASIC1.73□□□□□ -2.13
CDX1P47902 RNU6-793P-201ENST00000384233 104 ntBASIC1.73□□□□□ -2.13
CDX1P47902 SNORA67.2-201ENST00000384300 149 ntBASIC1.73□□□□□ -2.13
CDX1P47902 MIR221-201ENST00000385135 110 ntBASIC1.73□□□□□ -2.13
CDX1P47902 SNORA48.3-201ENST00000391081 134 ntBASIC1.73□□□□□ -2.13
CDX1P47902 SNORA75.4-201ENST00000391278 119 ntBASIC1.73□□□□□ -2.13
CDX1P47902 RNA5SP100-201ENST00000410903 110 ntBASIC1.73□□□□□ -2.13
CDX1P47902 RNA5SP59-201ENST00000410922 110 ntBASIC1.73□□□□□ -2.13
CDX1P47902 USP9YP16-201ENST00000430287 407 ntBASIC1.73□□□□□ -2.13
CDX1P47902 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.73□□□□□ -2.13
CDX1P47902 AC096638.1-201ENST00000444678 216 ntBASIC1.73□□□□□ -2.13
CDX1P47902 USP9YP23-201ENST00000455085 407 ntBASIC1.73□□□□□ -2.13
CDX1P47902 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.73□□□□□ -2.13
CDX1P47902 RNU7-87P-201ENST00000459343 62 ntBASIC1.73□□□□□ -2.13
CDX1P47902 MTND4P17-201ENST00000470444 350 ntBASIC1.73□□□□□ -2.13
CDX1P47902 RNA5SP384-201ENST00000516615 116 ntBASIC1.73□□□□□ -2.13
CDX1P47902 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.73□□□□□ -2.13
CDX1P47902 MIR4713-201ENST00000582691 75 ntBASIC1.73□□□□□ -2.13
CDX1P47902 AC005014.2-201ENST00000607795 599 ntBASIC1.73□□□□□ -2.13
CDX1P47902 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.73□□□□□ -2.13
CDX1P47902 AC009831.4-201ENST00000620744 325 ntBASIC1.73□□□□□ -2.13
CDX1P47902 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.73□□□□□ -2.13
CDX1P47902 AC068205.3-201ENST00000636385 468 ntBASIC1.73□□□□□ -2.13
CDX1P47902 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.73□□□□□ -2.13
CDX1P47902 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.73□□□□□ -2.13
CDX1P47902 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC1.73□□□□□ -2.13
CDX1P47902 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
CDX1P47902 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
CDX1P47902 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.72□□□□□ -2.13
CDX1P47902 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.72□□□□□ -2.13
CDX1P47902 RNU1-96P-201ENST00000364163 162 ntBASIC1.72□□□□□ -2.13
CDX1P47902 SNORD87-201ENST00000364849 89 ntBASIC1.72□□□□□ -2.13
CDX1P47902 Y_RNA.404-201ENST00000383978 102 ntBASIC1.72□□□□□ -2.13
CDX1P47902 MIR10B-201ENST00000385011 110 ntBASIC1.72□□□□□ -2.13
CDX1P47902 MIR190B-201ENST00000401119 79 ntBASIC1.72□□□□□ -2.13
CDX1P47902 MIR1253-201ENST00000408273 105 ntBASIC1.72□□□□□ -2.13
CDX1P47902 AC009310.1-201ENST00000414414 451 ntBASIC1.72□□□□□ -2.13
CDX1P47902 MTCYBP10-201ENST00000424905 650 ntBASIC1.72□□□□□ -2.13
CDX1P47902 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.72□□□□□ -2.13
CDX1P47902 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC1.72□□□□□ -2.13
CDX1P47902 HMGN1P12-201ENST00000499125 195 ntBASIC1.72□□□□□ -2.13
CDX1P47902 AC116353.2-201ENST00000505332 712 ntBASIC1.72□□□□□ -2.13
CDX1P47902 AC093303.1-201ENST00000514549 295 ntBASIC1.72□□□□□ -2.13
CDX1P47902 Y_RNA.691-201ENST00000516611 103 ntBASIC1.72□□□□□ -2.13
CDX1P47902 SNORA20.3-201ENST00000516880 132 ntBASIC1.72□□□□□ -2.13
CDX1P47902 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.72□□□□□ -2.13
CDX1P47902 SUB1P4-201ENST00000566062 339 ntBASIC1.72□□□□□ -2.13
CDX1P47902 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.72□□□□□ -2.13
CDX1P47902 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.72□□□□□ -2.13
CDX1P47902 AC016727.1-205ENST00000605437 569 ntBASIC1.72□□□□□ -2.13
CDX1P47902 AC006001.4-201ENST00000622243 395 ntBASIC1.72□□□□□ -2.13
CDX1P47902 MTND5P16-201ENST00000460269 1703 ntBASIC1.71□□□□□ -2.13
CDX1P47902 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
CDX1P47902 AC007098.1-201ENST00000420122 367 ntBASIC1.71□□□□□ -2.14
CDX1P47902 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.71□□□□□ -2.14
CDX1P47902 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.71□□□□□ -2.14
CDX1P47902 RPS29P21-201ENST00000496272 170 ntBASIC1.71□□□□□ -2.14
CDX1P47902 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.71□□□□□ -2.14
CDX1P47902 RNU6-1146P-201ENST00000516282 102 ntBASIC1.71□□□□□ -2.14
CDX1P47902 SCARNA16.2-201ENST00000516520 172 ntBASIC1.71□□□□□ -2.14
CDX1P47902 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.71□□□□□ -2.14
CDX1P47902 MIR5701-3-201ENST00000578890 82 ntBASIC1.71□□□□□ -2.14
CDX1P47902 MIR5701-1-201ENST00000585138 82 ntBASIC1.71□□□□□ -2.14
CDX1P47902 AC069114.2-201ENST00000604699 304 ntBASIC1.71□□□□□ -2.14
CDX1P47902 AC010999.1-201ENST00000611856 324 ntBASIC1.71□□□□□ -2.14
CDX1P47902 AL355073.2-201ENST00000612106 557 ntBASIC1.71□□□□□ -2.14
CDX1P47902 MIR5701-2-201ENST00000615634 82 ntBASIC1.71□□□□□ -2.14
CDX1P47902 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.71□□□□□ -2.14
CDX1P47902 AC126177.8-201ENST00000618339 1015 ntBASIC1.71□□□□□ -2.14
CDX1P47902 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC1.71□□□□□ -2.14
CDX1P47902 AC008873.1-201ENST00000625051 138 ntBASIC1.71□□□□□ -2.14
CDX1P47902 snoZ196.1-201ENST00000625269 89 ntBASIC1.71□□□□□ -2.14
CDX1P47902 MIR219B-201ENST00000637023 88 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 229.9 ms