Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AL359697.1-201ENST00000624879 587 ntBASIC1.61□□□□□ -2.15
CCDC43Q96MW1 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
CCDC43Q96MW1 OR4G1P-203ENST00000641984 1631 ntBASIC1.6□□□□□ -2.15
CCDC43Q96MW1 AC121333.1-201ENST00000567488 2709 ntBASIC1.6□□□□□ -2.15
CCDC43Q96MW1 RNU6-1305P-201ENST00000364353 104 ntBASIC1.6□□□□□ -2.15
CCDC43Q96MW1 RNU6-1235P-201ENST00000384559 107 ntBASIC1.6□□□□□ -2.15
CCDC43Q96MW1 MIR487A-201ENST00000385009 80 ntBASIC1.6□□□□□ -2.15
CCDC43Q96MW1 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC1.6□□□□□ -2.15
CCDC43Q96MW1 CST2P1-201ENST00000425770 87 ntBASIC1.6□□□□□ -2.15
CCDC43Q96MW1 AC073910.1-201ENST00000445047 438 ntBASIC1.6□□□□□ -2.15
CCDC43Q96MW1 RNU6-498P-201ENST00000459468 107 ntBASIC1.6□□□□□ -2.15
CCDC43Q96MW1 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC1.6□□□□□ -2.15
CCDC43Q96MW1 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.6□□□□□ -2.15
CCDC43Q96MW1 DNAJC19P9-201ENST00000555084 351 ntBASIC1.6□□□□□ -2.15
CCDC43Q96MW1 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.6□□□□□ -2.15
CCDC43Q96MW1 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.6□□□□□ -2.15
CCDC43Q96MW1 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.6□□□□□ -2.15
CCDC43Q96MW1 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.6□□□□□ -2.15
CCDC43Q96MW1 SNRPGP20-201ENST00000604477 205 ntBASIC1.6□□□□□ -2.15
CCDC43Q96MW1 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.6□□□□□ -2.15
CCDC43Q96MW1 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.6□□□□□ -2.15
CCDC43Q96MW1 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC1.6□□□□□ -2.15
CCDC43Q96MW1 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
CCDC43Q96MW1 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.59□□□□□ -2.15
CCDC43Q96MW1 AC007098.1-201ENST00000420122 367 ntBASIC1.59□□□□□ -2.15
CCDC43Q96MW1 SNRPEP10-201ENST00000420249 274 ntBASIC1.59□□□□□ -2.15
CCDC43Q96MW1 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC43Q96MW1 ERLEC1P1-201ENST00000433806 578 ntBASIC1.59□□□□□ -2.15
CCDC43Q96MW1 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC43Q96MW1 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.59□□□□□ -2.15
CCDC43Q96MW1 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.59□□□□□ -2.15
CCDC43Q96MW1 AC114982.1-201ENST00000469402 321 ntBASIC1.59□□□□□ -2.15
CCDC43Q96MW1 RPL23AP75-201ENST00000491601 451 ntBASIC1.59□□□□□ -2.15
CCDC43Q96MW1 AC004492.1-201ENST00000607036 742 ntBASIC1.59□□□□□ -2.15
CCDC43Q96MW1 AL353149.1-201ENST00000610667 244 ntBASIC1.59□□□□□ -2.15
CCDC43Q96MW1 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.59□□□□□ -2.15
CCDC43Q96MW1 MIR302D-201ENST00000362275 68 ntBASIC1.58□□□□□ -2.16
CCDC43Q96MW1 RNU6-254P-201ENST00000363377 107 ntBASIC1.58□□□□□ -2.16
CCDC43Q96MW1 SNORD113-7-201ENST00000363762 77 ntBASIC1.58□□□□□ -2.16
CCDC43Q96MW1 RNU4-13P-201ENST00000364019 141 ntBASIC1.58□□□□□ -2.16
CCDC43Q96MW1 Y_RNA.373-201ENST00000365600 103 ntBASIC1.58□□□□□ -2.16
CCDC43Q96MW1 RNU6-203P-201ENST00000384038 104 ntBASIC1.58□□□□□ -2.16
CCDC43Q96MW1 RNU6-331P-201ENST00000384724 107 ntBASIC1.58□□□□□ -2.16
CCDC43Q96MW1 FGF7P8-201ENST00000402994 292 ntBASIC1.58□□□□□ -2.16
CCDC43Q96MW1 RNU7-187P-201ENST00000458985 68 ntBASIC1.58□□□□□ -2.16
CCDC43Q96MW1 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.58□□□□□ -2.16
CCDC43Q96MW1 RNA5SP445-201ENST00000515889 115 ntBASIC1.58□□□□□ -2.16
CCDC43Q96MW1 RNU6-902P-201ENST00000517212 91 ntBASIC1.58□□□□□ -2.16
CCDC43Q96MW1 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.58□□□□□ -2.16
CCDC43Q96MW1 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.58□□□□□ -2.16
CCDC43Q96MW1 AC006001.4-201ENST00000622243 395 ntBASIC1.58□□□□□ -2.16
CCDC43Q96MW1 SCARNA4-201ENST00000629045 128 ntBASIC1.58□□□□□ -2.16
CCDC43Q96MW1 MTND4P5-201ENST00000435821 1374 ntBASIC1.58□□□□□ -2.16
CCDC43Q96MW1 SNORA33-201ENST00000363664 130 ntBASIC1.57□□□□□ -2.16
CCDC43Q96MW1 Y_RNA.372-201ENST00000365599 102 ntBASIC1.57□□□□□ -2.16
CCDC43Q96MW1 RNU6-780P-201ENST00000391030 104 ntBASIC1.57□□□□□ -2.16
CCDC43Q96MW1 RNU6-955P-201ENST00000410497 104 ntBASIC1.57□□□□□ -2.16
CCDC43Q96MW1 BTF3P4-201ENST00000418852 495 ntBASIC1.57□□□□□ -2.16
CCDC43Q96MW1 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.57□□□□□ -2.16
CCDC43Q96MW1 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.57□□□□□ -2.16
CCDC43Q96MW1 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC1.57□□□□□ -2.16
CCDC43Q96MW1 MTCO1P20-201ENST00000425366 358 ntBASIC1.57□□□□□ -2.16
CCDC43Q96MW1 AC069257.2-201ENST00000441819 155 ntBASIC1.57□□□□□ -2.16
CCDC43Q96MW1 AC245517.4-201ENST00000448601 281 ntBASIC1.57□□□□□ -2.16
CCDC43Q96MW1 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.57□□□□□ -2.16
CCDC43Q96MW1 AC079140.2-201ENST00000506193 142 ntBASIC1.57□□□□□ -2.16
CCDC43Q96MW1 Y_RNA.704-201ENST00000516851 102 ntBASIC1.57□□□□□ -2.16
CCDC43Q96MW1 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.57□□□□□ -2.16
CCDC43Q96MW1 MTND2P38-201ENST00000522536 667 ntBASIC1.57□□□□□ -2.16
CCDC43Q96MW1 AC010525.2-201ENST00000590920 195 ntBASIC1.57□□□□□ -2.16
CCDC43Q96MW1 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC1.57□□□□□ -2.16
CCDC43Q96MW1 AL133215.3-201ENST00000609801 448 ntBASIC1.57□□□□□ -2.16
CCDC43Q96MW1 AC068137.3-201ENST00000639191 341 ntBASIC1.57□□□□□ -2.16
CCDC43Q96MW1 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
CCDC43Q96MW1 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
CCDC43Q96MW1 ZNF204P-201ENST00000416749 2397 ntBASIC1.56□□□□□ -2.16
CCDC43Q96MW1 U8.1-201ENST00000362843 134 ntBASIC1.56□□□□□ -2.16
CCDC43Q96MW1 SNORA4.2-201ENST00000365313 147 ntBASIC1.56□□□□□ -2.16
CCDC43Q96MW1 RNU6-483P-201ENST00000384088 108 ntBASIC1.56□□□□□ -2.16
CCDC43Q96MW1 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC1.56□□□□□ -2.16
CCDC43Q96MW1 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC1.56□□□□□ -2.16
CCDC43Q96MW1 AL135790.2-201ENST00000437701 267 ntBASIC1.56□□□□□ -2.16
CCDC43Q96MW1 SEPT14P3-201ENST00000439401 183 ntBASIC1.56□□□□□ -2.16
CCDC43Q96MW1 AL732372.2-207ENST00000445840 183 ntBASIC1.56□□□□□ -2.16
CCDC43Q96MW1 SEPT14P2-201ENST00000453405 183 ntBASIC1.56□□□□□ -2.16
CCDC43Q96MW1 snoU13.27-201ENST00000459278 104 ntBASIC1.56□□□□□ -2.16
CCDC43Q96MW1 RNU7-57P-201ENST00000459540 60 ntBASIC1.56□□□□□ -2.16
CCDC43Q96MW1 SEPT14P4-201ENST00000513445 186 ntBASIC1.56□□□□□ -2.16
CCDC43Q96MW1 RNU6-1281P-201ENST00000516223 105 ntBASIC1.56□□□□□ -2.16
CCDC43Q96MW1 RNA5SP61-201ENST00000516453 100 ntBASIC1.56□□□□□ -2.16
CCDC43Q96MW1 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.56□□□□□ -2.16
CCDC43Q96MW1 FO082796.1-201ENST00000523795 183 ntBASIC1.56□□□□□ -2.16
CCDC43Q96MW1 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.56□□□□□ -2.16
CCDC43Q96MW1 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.56□□□□□ -2.16
CCDC43Q96MW1 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.56□□□□□ -2.16
CCDC43Q96MW1 snoU2-30.2-201ENST00000362805 70 ntBASIC1.55□□□□□ -2.16
CCDC43Q96MW1 RNU6-1252P-201ENST00000363054 104 ntBASIC1.55□□□□□ -2.16
CCDC43Q96MW1 Y_RNA.151-201ENST00000363566 112 ntBASIC1.55□□□□□ -2.16
CCDC43Q96MW1 RNU6-790P-201ENST00000384479 105 ntBASIC1.55□□□□□ -2.16
CCDC43Q96MW1 RNU6-417P-201ENST00000384712 107 ntBASIC1.55□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 193.3 ms