Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 MIR196B-201ENST00000384852 84 ntBASIC3.2□□□□□ -1.9
KRT40Q6A162 MIR549A-201ENST00000385268 96 ntBASIC3.2□□□□□ -1.9
KRT40Q6A162 RNU1-101P-201ENST00000391171 127 ntBASIC3.2□□□□□ -1.9
KRT40Q6A162 RPS26P42-201ENST00000413485 326 ntBASIC3.2□□□□□ -1.9
KRT40Q6A162 AC003685.2-201ENST00000422795 395 ntBASIC3.2□□□□□ -1.9
KRT40Q6A162 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.2□□□□□ -1.9
KRT40Q6A162 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.2□□□□□ -1.9
KRT40Q6A162 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.2□□□□□ -1.9
KRT40Q6A162 SNORD109B-201ENST00000458961 67 ntBASIC3.2□□□□□ -1.9
KRT40Q6A162 SNORD109A-201ENST00000459128 67 ntBASIC3.2□□□□□ -1.9
KRT40Q6A162 AC090525.1-201ENST00000479116 478 ntBASIC3.2□□□□□ -1.9
KRT40Q6A162 AC103975.1-201ENST00000482506 483 ntBASIC3.2□□□□□ -1.9
KRT40Q6A162 RNU6-567P-201ENST00000516746 107 ntBASIC3.2□□□□□ -1.9
KRT40Q6A162 SCARNA24.2-201ENST00000516968 130 ntBASIC3.2□□□□□ -1.9
KRT40Q6A162 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.2□□□□□ -1.9
KRT40Q6A162 AC130289.1-201ENST00000577321 73 ntBASIC3.2□□□□□ -1.9
KRT40Q6A162 MIR3605-201ENST00000583214 100 ntBASIC3.2□□□□□ -1.9
KRT40Q6A162 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC3.2□□□□□ -1.9
KRT40Q6A162 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
KRT40Q6A162 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.2□□□□□ -1.9
KRT40Q6A162 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.19□□□□□ -1.9
KRT40Q6A162 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
KRT40Q6A162 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.19□□□□□ -1.9
KRT40Q6A162 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.19□□□□□ -1.9
KRT40Q6A162 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.19□□□□□ -1.9
KRT40Q6A162 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
KRT40Q6A162 MIR26A1-201ENST00000362205 77 ntBASIC3.19□□□□□ -1.9
KRT40Q6A162 RNU6-1266P-201ENST00000362794 105 ntBASIC3.19□□□□□ -1.9
KRT40Q6A162 RNY1-201ENST00000364228 113 ntBASIC3.19□□□□□ -1.9
KRT40Q6A162 Y_RNA.277-201ENST00000364754 102 ntBASIC3.19□□□□□ -1.9
KRT40Q6A162 AC012306.1-201ENST00000423267 114 ntBASIC3.19□□□□□ -1.9
KRT40Q6A162 PTGES3P4-201ENST00000426243 356 ntBASIC3.19□□□□□ -1.9
KRT40Q6A162 AL358075.3-201ENST00000426289 226 ntBASIC3.19□□□□□ -1.9
KRT40Q6A162 AC087499.2-201ENST00000432861 149 ntBASIC3.19□□□□□ -1.9
KRT40Q6A162 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.19□□□□□ -1.9
KRT40Q6A162 SNORA9.3-201ENST00000516383 129 ntBASIC3.19□□□□□ -1.9
KRT40Q6A162 RNU5B-3P-201ENST00000516601 115 ntBASIC3.19□□□□□ -1.9
KRT40Q6A162 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC3.19□□□□□ -1.9
KRT40Q6A162 AL138880.2-201ENST00000616214 239 ntBASIC3.19□□□□□ -1.9
KRT40Q6A162 AC068831.7-201ENST00000616954 363 ntBASIC3.19□□□□□ -1.9
KRT40Q6A162 AC137590.2-201ENST00000619709 240 ntBASIC3.19□□□□□ -1.9
KRT40Q6A162 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.19□□□□□ -1.9
KRT40Q6A162 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
KRT40Q6A162 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
KRT40Q6A162 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
KRT40Q6A162 FAM35CP-201ENST00000554755 2470 ntBASIC3.18□□□□□ -1.9
KRT40Q6A162 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
KRT40Q6A162 RNU6-799P-201ENST00000363567 107 ntBASIC3.18□□□□□ -1.9
KRT40Q6A162 RNU6-873P-201ENST00000363833 107 ntBASIC3.18□□□□□ -1.9
KRT40Q6A162 RNU6-290P-201ENST00000365212 101 ntBASIC3.18□□□□□ -1.9
KRT40Q6A162 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
KRT40Q6A162 Y_RNA.462-201ENST00000384268 102 ntBASIC3.18□□□□□ -1.9
KRT40Q6A162 RNU4-30P-201ENST00000410245 143 ntBASIC3.18□□□□□ -1.9
KRT40Q6A162 AC019205.3-201ENST00000424573 156 ntBASIC3.18□□□□□ -1.9
KRT40Q6A162 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.18□□□□□ -1.9
KRT40Q6A162 RNU7-23P-201ENST00000459465 62 ntBASIC3.18□□□□□ -1.9
KRT40Q6A162 AC073901.1-201ENST00000462471 408 ntBASIC3.18□□□□□ -1.9
KRT40Q6A162 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.18□□□□□ -1.9
KRT40Q6A162 SNORD19.2-201ENST00000516978 73 ntBASIC3.18□□□□□ -1.9
KRT40Q6A162 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.18□□□□□ -1.9
KRT40Q6A162 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.18□□□□□ -1.9
KRT40Q6A162 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC3.18□□□□□ -1.9
KRT40Q6A162 MESTIT1_1.1-201ENST00000618871 140 ntBASIC3.18□□□□□ -1.9
KRT40Q6A162 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
KRT40Q6A162 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
KRT40Q6A162 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
KRT40Q6A162 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.17□□□□□ -1.9
KRT40Q6A162 Y_RNA.54-201ENST00000362766 105 ntBASIC3.17□□□□□ -1.9
KRT40Q6A162 RNU1-112P-201ENST00000364401 164 ntBASIC3.17□□□□□ -1.9
KRT40Q6A162 Y_RNA.269-201ENST00000364685 89 ntBASIC3.17□□□□□ -1.9
KRT40Q6A162 Y_RNA.274-201ENST00000364714 101 ntBASIC3.17□□□□□ -1.9
KRT40Q6A162 DYNLT3P1-201ENST00000378574 347 ntBASIC3.17□□□□□ -1.9
KRT40Q6A162 SNORD88.1-201ENST00000408684 91 ntBASIC3.17□□□□□ -1.9
KRT40Q6A162 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.17□□□□□ -1.9
KRT40Q6A162 AC138623.1-201ENST00000418060 216 ntBASIC3.17□□□□□ -1.9
KRT40Q6A162 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC3.17□□□□□ -1.9
KRT40Q6A162 AC112220.1-201ENST00000434628 355 ntBASIC3.17□□□□□ -1.9
KRT40Q6A162 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.17□□□□□ -1.9
KRT40Q6A162 SERF1AP1-201ENST00000514575 187 ntBASIC3.17□□□□□ -1.9
KRT40Q6A162 RNA5SP76-201ENST00000516277 87 ntBASIC3.17□□□□□ -1.9
KRT40Q6A162 RN7SKP282-201ENST00000516824 299 ntBASIC3.17□□□□□ -1.9
KRT40Q6A162 U2.14-201ENST00000615943 113 ntBASIC3.17□□□□□ -1.9
KRT40Q6A162 SNORD98-201ENST00000636377 67 ntBASIC3.17□□□□□ -1.9
KRT40Q6A162 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.17□□□□□ -1.9
KRT40Q6A162 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.17□□□□□ -1.9
KRT40Q6A162 AL161431.1-201ENST00000618966 4205 ntBASIC3.17□□□□□ -1.9
KRT40Q6A162 AC010889.1-201ENST00000566193 2666 ntBASIC3.16□□□□□ -1.9
KRT40Q6A162 AC002543.1-201ENST00000299783 1954 ntBASIC3.16□□□□□ -1.9
KRT40Q6A162 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
KRT40Q6A162 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
KRT40Q6A162 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
KRT40Q6A162 Y_RNA.65-201ENST00000362846 100 ntBASIC3.16□□□□□ -1.9
KRT40Q6A162 RNU6-529P-201ENST00000363383 104 ntBASIC3.16□□□□□ -1.9
KRT40Q6A162 RNU6-209P-201ENST00000384118 107 ntBASIC3.16□□□□□ -1.9
KRT40Q6A162 RNU6-748P-201ENST00000384648 107 ntBASIC3.16□□□□□ -1.9
KRT40Q6A162 RNU6-19P-201ENST00000384718 107 ntBASIC3.16□□□□□ -1.9
KRT40Q6A162 Y_RNA.570-201ENST00000384750 101 ntBASIC3.16□□□□□ -1.9
KRT40Q6A162 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
KRT40Q6A162 CYCSP48-201ENST00000417124 323 ntBASIC3.16□□□□□ -1.9
KRT40Q6A162 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 198.1 ms