Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AL513302.2-201ENST00000562313 1842 ntBASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 TNPO1P3-201ENST00000436471 2662 ntBASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 Y_RNA.164-201ENST00000363709 102 ntBASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 Y_RNA.293-201ENST00000364908 93 ntBASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 MIR616-201ENST00000385293 97 ntBASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 RNA5SP475-201ENST00000410568 110 ntBASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AL138785.1-201ENST00000425821 331 ntBASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 FTH1P6-201ENST00000430768 320 ntBASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AL121914.1-201ENST00000450188 156 ntBASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 snoU13.26-201ENST00000459452 105 ntBASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 RPL30P12-201ENST00000474666 353 ntBASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 VWA8P1-201ENST00000510889 176 ntBASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 IGKV2-26-201ENST00000518305 343 ntBASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 MIR5582-201ENST00000579697 68 ntBASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AL391903.3-201ENST00000612158 163 ntBASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AC080128.1-201ENST00000474389 1917 ntBASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 BCLAF1P1-201ENST00000505813 2752 ntBASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.58□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC4.57□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AL136360.1-201ENST00000503377 1900 ntBASIC4.57□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 Y_RNA.287-201ENST00000364853 94 ntBASIC4.57□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AP002088.1-201ENST00000382740 395 ntBASIC4.57□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 RNU6-356P-201ENST00000384140 107 ntBASIC4.57□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 RNU6-793P-201ENST00000384233 104 ntBASIC4.57□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AC063976.4-201ENST00000421971 163 ntBASIC4.57□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC4.57□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AC079780.1-201ENST00000428259 207 ntBASIC4.57□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC4.57□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC4.57□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 HSPE1P4-201ENST00000550617 308 ntBASIC4.57□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 MIR5680-201ENST00000577577 84 ntBASIC4.57□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AP002826.1-201ENST00000608835 315 ntBASIC4.57□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 MIR3914-2-201ENST00000637339 95 ntBASIC4.57□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AC068647.2-201ENST00000637380 353 ntBASIC4.57□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.57□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 RNU6-324P-201ENST00000363957 106 ntBASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 Y_RNA.226-201ENST00000364337 114 ntBASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 RNU1-140P-201ENST00000365040 165 ntBASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 MIR153-1-201ENST00000384914 90 ntBASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 Z98941.1-201ENST00000407764 100 ntBASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 ELOCP21-201ENST00000412558 336 ntBASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 RPS26P42-201ENST00000413485 326 ntBASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AL590383.1-201ENST00000428602 75 ntBASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 CYCSP4-201ENST00000429682 331 ntBASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AC021231.3-201ENST00000558497 370 ntBASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AL391813.1-201ENST00000603098 260 ntBASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 LINC00901.1-201ENST00000617252 152 ntBASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 RNU6-801P-201ENST00000364087 105 ntBASIC4.55□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 RNU6-1141P-201ENST00000364520 107 ntBASIC4.55□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 Y_RNA.369-201ENST00000365568 117 ntBASIC4.55□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 MIR15B-201ENST00000385045 98 ntBASIC4.55□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 RN7SKP61-201ENST00000410642 295 ntBASIC4.55□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AL158823.1-201ENST00000418441 478 ntBASIC4.55□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 RPS27P1-201ENST00000450552 247 ntBASIC4.55□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 RPS4XP13-201ENST00000483219 789 ntBASIC4.55□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 RNU6-436P-201ENST00000516171 114 ntBASIC4.55□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 NDUFA5P6-201ENST00000542110 379 ntBASIC4.55□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 LINC00933-203ENST00000559812 219 ntBASIC4.55□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.55□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AC018692.3-201ENST00000623929 123 ntBASIC4.55□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC4.55□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 AC010329.5-201ENST00000623497 2174 ntBASIC4.55□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
SENP3-EIF4A1A0A087X0R7 Y_RNA.24-201ENST00000362508 103 ntBASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 208.4 ms