Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 MTND3P5-201ENST00000512798 333 ntBASIC1.28□□□□□ -2.2
SCN4AP35499 RNA5SP401-201ENST00000515920 127 ntBASIC1.28□□□□□ -2.2
SCN4AP35499 AC109479.2-201ENST00000517842 174 ntBASIC1.28□□□□□ -2.2
SCN4AP35499 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.28□□□□□ -2.2
SCN4AP35499 AC245008.1-201ENST00000608123 476 ntBASIC1.28□□□□□ -2.2
SCN4AP35499 AL359314.1-201ENST00000616913 261 ntBASIC1.28□□□□□ -2.2
SCN4AP35499 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.28□□□□□ -2.21
SCN4AP35499 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.27□□□□□ -2.21
SCN4AP35499 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.27□□□□□ -2.21
SCN4AP35499 RNU6-282P-201ENST00000365357 103 ntBASIC1.27□□□□□ -2.21
SCN4AP35499 Y_RNA.402-201ENST00000383972 102 ntBASIC1.27□□□□□ -2.21
SCN4AP35499 MIR216A-201ENST00000385063 110 ntBASIC1.27□□□□□ -2.21
SCN4AP35499 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.27□□□□□ -2.21
SCN4AP35499 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC1.27□□□□□ -2.21
SCN4AP35499 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.27□□□□□ -2.21
SCN4AP35499 MTND2P22-201ENST00000444325 1033 ntBASIC1.27□□□□□ -2.21
SCN4AP35499 MTATP6P26-201ENST00000445926 662 ntBASIC1.27□□□□□ -2.21
SCN4AP35499 AL356010.1-201ENST00000456364 102 ntBASIC1.27□□□□□ -2.21
SCN4AP35499 U8.21-201ENST00000459536 136 ntBASIC1.27□□□□□ -2.21
SCN4AP35499 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC1.27□□□□□ -2.21
SCN4AP35499 AC091133.4-201ENST00000511142 308 ntBASIC1.27□□□□□ -2.21
SCN4AP35499 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC1.27□□□□□ -2.21
SCN4AP35499 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC1.27□□□□□ -2.21
SCN4AP35499 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC1.27□□□□□ -2.21
SCN4AP35499 AL031274.2-201ENST00000599419 203 ntBASIC1.27□□□□□ -2.21
SCN4AP35499 AL022345.1-201ENST00000607292 135 ntBASIC1.27□□□□□ -2.21
SCN4AP35499 AC022418.1-201ENST00000624118 445 ntBASIC1.27□□□□□ -2.21
SCN4AP35499 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.27□□□□□ -2.21
SCN4AP35499 MTND5P26-201ENST00000426018 1752 ntBASIC1.27□□□□□ -2.21
SCN4AP35499 SNORD116-2-201ENST00000384274 95 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 RNU6-1119P-201ENST00000384349 108 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 SNORD116-6-201ENST00000384711 96 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 MIR532-201ENST00000385025 91 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 HMGN2P39-201ENST00000398005 273 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 AL357139.1-201ENST00000407792 426 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 MTCO2P16-201ENST00000436962 677 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.26□□□□□ -2.21
SCN4AP35499 AL122001.1-201ENST00000457027 370 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 RPS29P23-201ENST00000458635 123 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 RPL9P9-202ENST00000466501 579 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC1.26□□□□□ -2.21
SCN4AP35499 RNA5SP137-201ENST00000516833 135 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 AC024909.2-201ENST00000553035 286 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 AC245505.1-201ENST00000556398 224 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 MIR3923-201ENST00000579521 83 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 FGF7P1-201ENST00000582820 288 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 AC107304.1-201ENST00000604229 296 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 AC103810.9-201ENST00000606688 112 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 AC073534.2-201ENST00000620377 381 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.26□□□□□ -2.21
SCN4AP35499 RNA5SP457-201ENST00000363657 124 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 Y_RNA.517-201ENST00000384551 106 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 SNORA16.2-201ENST00000390991 127 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.26□□□□□ -2.21
SCN4AP35499 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC1.26□□□□□ -2.21
SCN4AP35499 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1.26□□□□□ -2.21
SCN4AP35499 MTATP6P17-201ENST00000431030 672 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 MTCO2P3-201ENST00000442543 421 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 AC245102.2-201ENST00000448956 180 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 AC006026.2-201ENST00000457376 180 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 MED28P2-201ENST00000475771 317 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 AL163973.1-201ENST00000484753 577 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC1.26□□□□□ -2.21
SCN4AP35499 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC1.26□□□□□ -2.21
SCN4AP35499 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.26□□□□□ -2.21
SCN4AP35499 AC093852.1-201ENST00000503587 266 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 AC114801.2-201ENST00000503825 781 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 HMGB1P29-201ENST00000505659 499 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 PTP4A1P4-201ENST00000512479 322 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 SNORA4.4-201ENST00000515921 135 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 RNA5SP503-201ENST00000517047 117 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 AL137161.1-201ENST00000532231 390 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 AC018630.3-201ENST00000542637 96 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 HSPE1P4-201ENST00000550617 308 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 AC211469.2-201ENST00000605461 205 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.26□□□□□ -2.21
SCN4AP35499 AC104458.1-201ENST00000608243 463 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 AP001596.2-201ENST00000608410 312 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 MIR6857-201ENST00000613267 93 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.26□□□□□ -2.21
SCN4AP35499 AC005520.5-201ENST00000613926 164 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 AC068137.3-201ENST00000639191 341 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 AC245060.5-201ENST00000610778 3293 ntBASIC1.26□□□□□ -2.21
SCN4AP35499 Y_RNA.399-201ENST00000383955 105 ntBASIC1.25□□□□□ -2.21
SCN4AP35499 RNU6-45P-201ENST00000384471 107 ntBASIC1.25□□□□□ -2.21
SCN4AP35499 RNU6-360P-201ENST00000390944 104 ntBASIC1.25□□□□□ -2.21
SCN4AP35499 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.25□□□□□ -2.21
SCN4AP35499 CBX3P6-201ENST00000430257 527 ntBASIC1.25□□□□□ -2.21
SCN4AP35499 RNU6-189P-201ENST00000516120 101 ntBASIC1.25□□□□□ -2.21
SCN4AP35499 SNORA48.11-201ENST00000517015 89 ntBASIC1.25□□□□□ -2.21
SCN4AP35499 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.25□□□□□ -2.21
SCN4AP35499 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC1.25□□□□□ -2.21
SCN4AP35499 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC1.25□□□□□ -2.21
SCN4AP35499 CTHRC1P1-201ENST00000605383 469 ntBASIC1.25□□□□□ -2.21
SCN4AP35499 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC1.25□□□□□ -2.21
SCN4AP35499 SNORD98-201ENST00000636377 67 ntBASIC1.25□□□□□ -2.21
SCN4AP35499 Y_RNA.359-201ENST00000365498 102 ntBASIC1.24□□□□□ -2.21
SCN4AP35499 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.24□□□□□ -2.21
SCN4AP35499 NCOR1P3-201ENST00000420479 303 ntBASIC1.24□□□□□ -2.21
SCN4AP35499 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.24□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 165.7 ms