Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 SNORA18.3-201ENST00000384122 132 ntBASIC3.32□□□□□ -1.88
KRT40Q6A162 MIR544A-201ENST00000384855 91 ntBASIC3.32□□□□□ -1.88
KRT40Q6A162 MIR181A2-201ENST00000384863 110 ntBASIC3.32□□□□□ -1.88
KRT40Q6A162 MIR181B1-201ENST00000385240 110 ntBASIC3.32□□□□□ -1.88
KRT40Q6A162 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
KRT40Q6A162 RNA5SP508-201ENST00000411327 119 ntBASIC3.32□□□□□ -1.88
KRT40Q6A162 AC023141.4-201ENST00000412031 328 ntBASIC3.32□□□□□ -1.88
KRT40Q6A162 EIF1AXP1-201ENST00000419267 435 ntBASIC3.32□□□□□ -1.88
KRT40Q6A162 AL139281.1-201ENST00000422120 335 ntBASIC3.32□□□□□ -1.88
KRT40Q6A162 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC3.32□□□□□ -1.88
KRT40Q6A162 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.32□□□□□ -1.88
KRT40Q6A162 AC092185.1-201ENST00000491371 97 ntBASIC3.32□□□□□ -1.88
KRT40Q6A162 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.32□□□□□ -1.88
KRT40Q6A162 RNU6-237P-201ENST00000515985 71 ntBASIC3.32□□□□□ -1.88
KRT40Q6A162 MIR2355-201ENST00000517199 87 ntBASIC3.32□□□□□ -1.88
KRT40Q6A162 AC022868.1-201ENST00000517767 391 ntBASIC3.32□□□□□ -1.88
KRT40Q6A162 AC091144.1-201ENST00000519573 138 ntBASIC3.32□□□□□ -1.88
KRT40Q6A162 AC027288.2-201ENST00000553028 243 ntBASIC3.32□□□□□ -1.88
KRT40Q6A162 AC023824.2-201ENST00000566185 400 ntBASIC3.32□□□□□ -1.88
KRT40Q6A162 AC009163.5-201ENST00000575421 637 ntBASIC3.32□□□□□ -1.88
KRT40Q6A162 MIR5571-201ENST00000577998 113 ntBASIC3.32□□□□□ -1.88
KRT40Q6A162 MIR3609-201ENST00000582661 80 ntBASIC3.32□□□□□ -1.88
KRT40Q6A162 AC240442.1-201ENST00000616055 283 ntBASIC3.32□□□□□ -1.88
KRT40Q6A162 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.32□□□□□ -1.88
KRT40Q6A162 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
KRT40Q6A162 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
KRT40Q6A162 AC093010.3-201ENST00000570269 15214 ntBASIC3.32□□□□□ -1.88
KRT40Q6A162 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
KRT40Q6A162 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
KRT40Q6A162 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
KRT40Q6A162 RNU6-858P-201ENST00000362436 107 ntBASIC3.31□□□□□ -1.88
KRT40Q6A162 Y_RNA.143-201ENST00000363520 106 ntBASIC3.31□□□□□ -1.88
KRT40Q6A162 RNU6-1280P-201ENST00000365211 107 ntBASIC3.31□□□□□ -1.88
KRT40Q6A162 Y_RNA.439-201ENST00000384119 94 ntBASIC3.31□□□□□ -1.88
KRT40Q6A162 Y_RNA.552-201ENST00000384665 112 ntBASIC3.31□□□□□ -1.88
KRT40Q6A162 RNU1-139P-201ENST00000391307 165 ntBASIC3.31□□□□□ -1.88
KRT40Q6A162 RNU2-20P-201ENST00000410425 191 ntBASIC3.31□□□□□ -1.88
KRT40Q6A162 AL590664.1-201ENST00000448065 339 ntBASIC3.31□□□□□ -1.88
KRT40Q6A162 snoU13.28-201ENST00000459235 104 ntBASIC3.31□□□□□ -1.88
KRT40Q6A162 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.31□□□□□ -1.88
KRT40Q6A162 SCGB1D5P-201ENST00000515134 247 ntBASIC3.31□□□□□ -1.88
KRT40Q6A162 Y_RNA.713-201ENST00000517013 96 ntBASIC3.31□□□□□ -1.88
KRT40Q6A162 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.31□□□□□ -1.88
KRT40Q6A162 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC3.31□□□□□ -1.88
KRT40Q6A162 AC093023.1-201ENST00000547375 507 ntBASIC3.31□□□□□ -1.88
KRT40Q6A162 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.31□□□□□ -1.88
KRT40Q6A162 AC090115.4-201ENST00000609970 188 ntBASIC3.31□□□□□ -1.88
KRT40Q6A162 MIR376A1-201ENST00000616574 68 ntBASIC3.31□□□□□ -1.88
KRT40Q6A162 AC073308.1-201ENST00000623696 305 ntBASIC3.31□□□□□ -1.88
KRT40Q6A162 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
KRT40Q6A162 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.31□□□□□ -1.88
KRT40Q6A162 FAM35BP-202ENST00000497389 3337 ntBASIC3.3□□□□□ -1.88
KRT40Q6A162 Y_RNA.16-201ENST00000362421 102 ntBASIC3.3□□□□□ -1.88
KRT40Q6A162 RNA5SP361-201ENST00000362686 118 ntBASIC3.3□□□□□ -1.88
KRT40Q6A162 Y_RNA.237-201ENST00000364439 102 ntBASIC3.3□□□□□ -1.88
KRT40Q6A162 SNORA51.4-201ENST00000364993 124 ntBASIC3.3□□□□□ -1.88
KRT40Q6A162 RNU6-622P-201ENST00000384272 103 ntBASIC3.3□□□□□ -1.88
KRT40Q6A162 RNU6-843P-201ENST00000384454 104 ntBASIC3.3□□□□□ -1.88
KRT40Q6A162 Y_RNA.539-201ENST00000384635 107 ntBASIC3.3□□□□□ -1.88
KRT40Q6A162 MIR512-1-201ENST00000384913 84 ntBASIC3.3□□□□□ -1.88
KRT40Q6A162 RNU6-1245P-201ENST00000411130 106 ntBASIC3.3□□□□□ -1.88
KRT40Q6A162 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.3□□□□□ -1.88
KRT40Q6A162 HMGN2P20-201ENST00000437531 273 ntBASIC3.3□□□□□ -1.88
KRT40Q6A162 EEF1B2P7-201ENST00000451177 676 ntBASIC3.3□□□□□ -1.88
KRT40Q6A162 AP000705.1-201ENST00000454567 350 ntBASIC3.3□□□□□ -1.88
KRT40Q6A162 SNRPGP7-201ENST00000469016 106 ntBASIC3.3□□□□□ -1.88
KRT40Q6A162 HMGB3P17-201ENST00000504195 649 ntBASIC3.3□□□□□ -1.88
KRT40Q6A162 ACA59.2-201ENST00000517061 156 ntBASIC3.3□□□□□ -1.88
KRT40Q6A162 RNU6-111P-201ENST00000517179 105 ntBASIC3.3□□□□□ -1.88
KRT40Q6A162 NACAP3-201ENST00000552100 481 ntBASIC3.3□□□□□ -1.88
KRT40Q6A162 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.3□□□□□ -1.88
KRT40Q6A162 MIR4659A-201ENST00000580269 81 ntBASIC3.3□□□□□ -1.88
KRT40Q6A162 AL356157.2-201ENST00000605122 111 ntBASIC3.3□□□□□ -1.88
KRT40Q6A162 AC141273.2-201ENST00000618989 130 ntBASIC3.3□□□□□ -1.88
KRT40Q6A162 U6.104-201ENST00000637979 90 ntBASIC3.3□□□□□ -1.88
KRT40Q6A162 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
KRT40Q6A162 LINC02555-201ENST00000563933 1951 ntBASIC3.29□□□□□ -1.88
KRT40Q6A162 AC096644.4-201ENST00000563417 2912 ntBASIC3.29□□□□□ -1.88
KRT40Q6A162 RNU6-1141P-201ENST00000364520 107 ntBASIC3.29□□□□□ -1.88
KRT40Q6A162 Y_RNA.504-201ENST00000384481 104 ntBASIC3.29□□□□□ -1.88
KRT40Q6A162 RNU6-102P-201ENST00000384485 104 ntBASIC3.29□□□□□ -1.88
KRT40Q6A162 SNORA1.3-201ENST00000384676 136 ntBASIC3.29□□□□□ -1.88
KRT40Q6A162 SNORD78.2-201ENST00000391076 69 ntBASIC3.29□□□□□ -1.88
KRT40Q6A162 MRPL35P1-201ENST00000404272 572 ntBASIC3.29□□□□□ -1.88
KRT40Q6A162 AL714022.1-201ENST00000439897 151 ntBASIC3.29□□□□□ -1.88
KRT40Q6A162 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC3.29□□□□□ -1.88
KRT40Q6A162 CKS1BP7-201ENST00000522230 235 ntBASIC3.29□□□□□ -1.88
KRT40Q6A162 HSPE1P4-201ENST00000550617 308 ntBASIC3.29□□□□□ -1.88
KRT40Q6A162 ADAM3A-203ENST00000461344 2157 ntBASIC3.29□□□□□ -1.88
KRT40Q6A162 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
KRT40Q6A162 RBBP8P1-201ENST00000449447 1844 ntBASIC3.28□□□□□ -1.88
KRT40Q6A162 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
KRT40Q6A162 Y_RNA.20-201ENST00000362479 113 ntBASIC3.28□□□□□ -1.88
KRT40Q6A162 SNORA20.1-201ENST00000364790 130 ntBASIC3.28□□□□□ -1.88
KRT40Q6A162 RNU6-937P-201ENST00000384325 106 ntBASIC3.28□□□□□ -1.88
KRT40Q6A162 Y_RNA.541-201ENST00000384640 113 ntBASIC3.28□□□□□ -1.88
KRT40Q6A162 MIR10B-201ENST00000385011 110 ntBASIC3.28□□□□□ -1.88
KRT40Q6A162 MIR153-2-201ENST00000385225 87 ntBASIC3.28□□□□□ -1.88
KRT40Q6A162 RNU6-1140P-201ENST00000410517 106 ntBASIC3.28□□□□□ -1.88
KRT40Q6A162 RN7SKP61-201ENST00000410642 295 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 185.1 ms