Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.82□□□□□ -1.48
CCDC61Q9Y6R9 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC61Q9Y6R9 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC61Q9Y6R9 MIR554-201ENST00000384874 96 ntBASIC5.81□□□□□ -1.48
CCDC61Q9Y6R9 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC61Q9Y6R9 AC090602.1-201ENST00000469695 252 ntBASIC5.81□□□□□ -1.48
CCDC61Q9Y6R9 AC007751.1-201ENST00000529260 376 ntBASIC5.81□□□□□ -1.48
CCDC61Q9Y6R9 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC61Q9Y6R9 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC5.81□□□□□ -1.48
CCDC61Q9Y6R9 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
CCDC61Q9Y6R9 AL672296.1-201ENST00000427780 2158 ntBASIC5.81□□□□□ -1.48
CCDC61Q9Y6R9 AC103988.1-201ENST00000566382 2177 ntBASIC5.81□□□□□ -1.48
CCDC61Q9Y6R9 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC61Q9Y6R9 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC61Q9Y6R9 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC61Q9Y6R9 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
CCDC61Q9Y6R9 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC61Q9Y6R9 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC61Q9Y6R9 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC61Q9Y6R9 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC61Q9Y6R9 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC61Q9Y6R9 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC61Q9Y6R9 RNU6-24P-201ENST00000384440 107 ntBASIC5.8□□□□□ -1.48
CCDC61Q9Y6R9 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC61Q9Y6R9 MIR1911-201ENST00000410783 80 ntBASIC5.8□□□□□ -1.48
CCDC61Q9Y6R9 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC61Q9Y6R9 RPS26P55-201ENST00000471178 356 ntBASIC5.8□□□□□ -1.48
CCDC61Q9Y6R9 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5.8□□□□□ -1.48
CCDC61Q9Y6R9 RPL23AP91-201ENST00000569211 455 ntBASIC5.8□□□□□ -1.48
CCDC61Q9Y6R9 AC107294.3-201ENST00000609211 526 ntBASIC5.8□□□□□ -1.48
CCDC61Q9Y6R9 Pinc.1-201ENST00000616452 154 ntBASIC5.8□□□□□ -1.48
CCDC61Q9Y6R9 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC61Q9Y6R9 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC61Q9Y6R9 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC61Q9Y6R9 RNU6-884P-201ENST00000363889 107 ntBASIC5.79□□□□□ -1.48
CCDC61Q9Y6R9 RNU4-36P-201ENST00000364294 144 ntBASIC5.79□□□□□ -1.48
CCDC61Q9Y6R9 Y_RNA.265-201ENST00000364677 108 ntBASIC5.79□□□□□ -1.48
CCDC61Q9Y6R9 RNU1-44P-201ENST00000384453 163 ntBASIC5.79□□□□□ -1.48
CCDC61Q9Y6R9 SNORD66.1-201ENST00000391230 76 ntBASIC5.79□□□□□ -1.48
CCDC61Q9Y6R9 PTMAP5-201ENST00000393073 333 ntBASIC5.79□□□□□ -1.48
CCDC61Q9Y6R9 RPL36AP10-201ENST00000421785 322 ntBASIC5.79□□□□□ -1.48
CCDC61Q9Y6R9 RPS29P7-201ENST00000439662 171 ntBASIC5.79□□□□□ -1.48
CCDC61Q9Y6R9 AC108751.2-201ENST00000469993 231 ntBASIC5.79□□□□□ -1.48
CCDC61Q9Y6R9 RN7SL817P-201ENST00000480777 288 ntBASIC5.79□□□□□ -1.48
CCDC61Q9Y6R9 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC61Q9Y6R9 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC61Q9Y6R9 AC005921.1-201ENST00000510589 286 ntBASIC5.79□□□□□ -1.48
CCDC61Q9Y6R9 RNU1-45P-201ENST00000517191 141 ntBASIC5.79□□□□□ -1.48
CCDC61Q9Y6R9 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC61Q9Y6R9 MIR3129-201ENST00000581095 76 ntBASIC5.79□□□□□ -1.48
CCDC61Q9Y6R9 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC61Q9Y6R9 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC5.79□□□□□ -1.48
CCDC61Q9Y6R9 AC112200.1-201ENST00000625015 234 ntBASIC5.79□□□□□ -1.48
CCDC61Q9Y6R9 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC61Q9Y6R9 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC61Q9Y6R9 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC61Q9Y6R9 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
CCDC61Q9Y6R9 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC61Q9Y6R9 SNORA68.2-201ENST00000391263 128 ntBASIC5.78□□□□□ -1.48
CCDC61Q9Y6R9 AL355796.1-201ENST00000406706 323 ntBASIC5.78□□□□□ -1.48
CCDC61Q9Y6R9 MIR1185-2-201ENST00000408687 86 ntBASIC5.78□□□□□ -1.48
CCDC61Q9Y6R9 AL353705.1-201ENST00000433468 480 ntBASIC5.78□□□□□ -1.48
CCDC61Q9Y6R9 SNORA31.8-201ENST00000516327 108 ntBASIC5.78□□□□□ -1.48
CCDC61Q9Y6R9 RNU6-1282P-201ENST00000516735 96 ntBASIC5.78□□□□□ -1.48
CCDC61Q9Y6R9 AC022655.2-201ENST00000577280 318 ntBASIC5.78□□□□□ -1.48
CCDC61Q9Y6R9 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC61Q9Y6R9 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
CCDC61Q9Y6R9 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC61Q9Y6R9 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.48
CCDC61Q9Y6R9 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
CCDC61Q9Y6R9 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC61Q9Y6R9 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC5.77□□□□□ -1.49
CCDC61Q9Y6R9 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
CCDC61Q9Y6R9 AL356292.1-201ENST00000283110 373 ntBASIC5.77□□□□□ -1.49
CCDC61Q9Y6R9 RNU4-13P-201ENST00000364019 141 ntBASIC5.77□□□□□ -1.49
CCDC61Q9Y6R9 AL117342.1-201ENST00000404861 406 ntBASIC5.77□□□□□ -1.49
CCDC61Q9Y6R9 AL645939.1-201ENST00000453429 797 ntBASIC5.77□□□□□ -1.49
CCDC61Q9Y6R9 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC61Q9Y6R9 SCARNA23-201ENST00000516060 130 ntBASIC5.77□□□□□ -1.49
CCDC61Q9Y6R9 ACA59.2-201ENST00000517061 156 ntBASIC5.77□□□□□ -1.49
CCDC61Q9Y6R9 AC007229.1-201ENST00000590455 412 ntBASIC5.77□□□□□ -1.49
CCDC61Q9Y6R9 AC002064.3-201ENST00000623448 346 ntBASIC5.77□□□□□ -1.49
CCDC61Q9Y6R9 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC61Q9Y6R9 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
CCDC61Q9Y6R9 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.77□□□□□ -1.49
CCDC61Q9Y6R9 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC61Q9Y6R9 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.76□□□□□ -1.49
CCDC61Q9Y6R9 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC61Q9Y6R9 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC61Q9Y6R9 SNORA27.1-201ENST00000362604 124 ntBASIC5.76□□□□□ -1.49
CCDC61Q9Y6R9 Y_RNA.73-201ENST00000362910 113 ntBASIC5.76□□□□□ -1.49
CCDC61Q9Y6R9 RNU6-1305P-201ENST00000364353 104 ntBASIC5.76□□□□□ -1.49
CCDC61Q9Y6R9 RNU6-787P-201ENST00000384032 107 ntBASIC5.76□□□□□ -1.49
CCDC61Q9Y6R9 HMGN2P27-201ENST00000427352 270 ntBASIC5.76□□□□□ -1.49
CCDC61Q9Y6R9 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC61Q9Y6R9 RPL23AP46-201ENST00000438548 490 ntBASIC5.76□□□□□ -1.49
CCDC61Q9Y6R9 AL591623.2-201ENST00000449978 222 ntBASIC5.76□□□□□ -1.49
CCDC61Q9Y6R9 snoU13.4-201ENST00000458916 104 ntBASIC5.76□□□□□ -1.49
CCDC61Q9Y6R9 RPS29P19-201ENST00000479709 171 ntBASIC5.76□□□□□ -1.49
CCDC61Q9Y6R9 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 340.5 ms