Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 AC090425.1-201ENST00000610007 140 ntBASIC3.64□□□□□ -1.83
KRT40Q6A162 AC107871.2-201ENST00000612894 502 ntBASIC3.64□□□□□ -1.83
KRT40Q6A162 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
KRT40Q6A162 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
KRT40Q6A162 AL359693.1-201ENST00000614959 2407 ntBASIC3.63□□□□□ -1.83
KRT40Q6A162 AC008568.2-201ENST00000623862 2313 ntBASIC3.63□□□□□ -1.83
KRT40Q6A162 RNU6-428P-201ENST00000362942 107 ntBASIC3.63□□□□□ -1.83
KRT40Q6A162 U3.6-201ENST00000363622 211 ntBASIC3.63□□□□□ -1.83
KRT40Q6A162 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.63□□□□□ -1.83
KRT40Q6A162 MIR325-201ENST00000385260 98 ntBASIC3.63□□□□□ -1.83
KRT40Q6A162 RPL32P35-201ENST00000415214 394 ntBASIC3.63□□□□□ -1.83
KRT40Q6A162 CBX3P6-201ENST00000430257 527 ntBASIC3.63□□□□□ -1.83
KRT40Q6A162 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.63□□□□□ -1.83
KRT40Q6A162 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.63□□□□□ -1.83
KRT40Q6A162 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.63□□□□□ -1.83
KRT40Q6A162 Z82210.1-201ENST00000440037 231 ntBASIC3.63□□□□□ -1.83
KRT40Q6A162 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.63□□□□□ -1.83
KRT40Q6A162 RPS12P18-201ENST00000442381 270 ntBASIC3.63□□□□□ -1.83
KRT40Q6A162 AC009237.8-201ENST00000445492 379 ntBASIC3.63□□□□□ -1.83
KRT40Q6A162 RN7SL330P-201ENST00000469709 307 ntBASIC3.63□□□□□ -1.83
KRT40Q6A162 Y_RNA.687-201ENST00000516558 91 ntBASIC3.63□□□□□ -1.83
KRT40Q6A162 AP002404.1-201ENST00000532005 451 ntBASIC3.63□□□□□ -1.83
KRT40Q6A162 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.63□□□□□ -1.83
KRT40Q6A162 HSBP1P1-201ENST00000555205 166 ntBASIC3.63□□□□□ -1.83
KRT40Q6A162 MIR5701-3-201ENST00000578890 82 ntBASIC3.63□□□□□ -1.83
KRT40Q6A162 MIR3945-201ENST00000581853 98 ntBASIC3.63□□□□□ -1.83
KRT40Q6A162 MIR4273-201ENST00000582824 84 ntBASIC3.63□□□□□ -1.83
KRT40Q6A162 MIR5701-1-201ENST00000585138 82 ntBASIC3.63□□□□□ -1.83
KRT40Q6A162 AL355598.1-201ENST00000604169 202 ntBASIC3.63□□□□□ -1.83
KRT40Q6A162 AP000787.2-201ENST00000604432 568 ntBASIC3.63□□□□□ -1.83
KRT40Q6A162 MIR5701-2-201ENST00000615634 82 ntBASIC3.63□□□□□ -1.83
KRT40Q6A162 HMGB1P24-202ENST00000615653 685 ntBASIC3.63□□□□□ -1.83
KRT40Q6A162 XIST_intron.1-201ENST00000619444 68 ntBASIC3.63□□□□□ -1.83
KRT40Q6A162 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
KRT40Q6A162 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.62□□□□□ -1.83
KRT40Q6A162 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.62□□□□□ -1.83
KRT40Q6A162 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.62□□□□□ -1.83
KRT40Q6A162 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
KRT40Q6A162 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
KRT40Q6A162 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
KRT40Q6A162 RNU6-933P-201ENST00000384424 107 ntBASIC3.62□□□□□ -1.83
KRT40Q6A162 MT-TG-201ENST00000387429 68 ntBASIC3.62□□□□□ -1.83
KRT40Q6A162 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
KRT40Q6A162 RNU6-101P-201ENST00000410323 104 ntBASIC3.62□□□□□ -1.83
KRT40Q6A162 RPL21P66-201ENST00000426566 466 ntBASIC3.62□□□□□ -1.83
KRT40Q6A162 AC007560.1-201ENST00000426912 237 ntBASIC3.62□□□□□ -1.83
KRT40Q6A162 AC107083.1-201ENST00000439643 279 ntBASIC3.62□□□□□ -1.83
KRT40Q6A162 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.62□□□□□ -1.83
KRT40Q6A162 RPS29P27-201ENST00000463711 170 ntBASIC3.62□□□□□ -1.83
KRT40Q6A162 AC114801.2-201ENST00000503825 781 ntBASIC3.62□□□□□ -1.83
KRT40Q6A162 AC131281.1-201ENST00000522984 164 ntBASIC3.62□□□□□ -1.83
KRT40Q6A162 AC022616.4-201ENST00000522985 181 ntBASIC3.62□□□□□ -1.83
KRT40Q6A162 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.62□□□□□ -1.83
KRT40Q6A162 MIR5696-201ENST00000578474 85 ntBASIC3.62□□□□□ -1.83
KRT40Q6A162 AC008121.1-201ENST00000603244 268 ntBASIC3.62□□□□□ -1.83
KRT40Q6A162 AL355297.3-201ENST00000604082 446 ntBASIC3.62□□□□□ -1.83
KRT40Q6A162 AC124312.5-201ENST00000604451 268 ntBASIC3.62□□□□□ -1.83
KRT40Q6A162 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.62□□□□□ -1.83
KRT40Q6A162 AL021879.1-201ENST00000611756 288 ntBASIC3.62□□□□□ -1.83
KRT40Q6A162 AC090617.7-201ENST00000623952 126 ntBASIC3.62□□□□□ -1.83
KRT40Q6A162 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
KRT40Q6A162 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.62□□□□□ -1.83
KRT40Q6A162 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
KRT40Q6A162 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
KRT40Q6A162 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
KRT40Q6A162 MIR148B-201ENST00000362252 99 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 RNU6-600P-201ENST00000362524 99 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 SNORD50.1-201ENST00000362987 71 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 RNU6-1222P-201ENST00000384615 107 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 MIR607-201ENST00000385241 96 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 MIR493-201ENST00000385254 89 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 MIR1302-3-201ENST00000408128 138 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 RNU2-68P-201ENST00000410878 191 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 OOSP1P1-201ENST00000423265 274 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 AC092047.1-201ENST00000424997 240 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 AC098614.2-201ENST00000426040 255 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 SNRPEP9-201ENST00000436794 238 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 AL078601.1-201ENST00000444542 271 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 RN7SL863P-201ENST00000462370 296 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 AC133134.1-201ENST00000466800 359 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 RPL31P13-201ENST00000484151 370 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 RPL22P13-201ENST00000493291 347 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.61□□□□□ -1.83
KRT40Q6A162 Y_RNA.668-201ENST00000516233 93 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 AC068657.1-201ENST00000520807 306 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 ZNF192P1-203ENST00000565888 810 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 MYL12BP1-201ENST00000569826 507 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 AL645944.1-201ENST00000603857 493 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 AC005046.1-201ENST00000608515 625 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 MIR1244-1-201ENST00000612829 85 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.61□□□□□ -1.83
KRT40Q6A162 MIR1244-3-201ENST00000635744 85 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 MIR1244-2-201ENST00000636449 85 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 MIR1244-4-202ENST00000636813 85 ntBASIC3.61□□□□□ -1.83
KRT40Q6A162 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
KRT40Q6A162 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
KRT40Q6A162 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
KRT40Q6A162 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 231.2 ms