Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RNU6-153P-201ENST00000364422 104 ntBASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.400-201ENST00000383963 111 ntBASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RNU6-514P-201ENST00000384208 107 ntBASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.586-201ENST00000391146 98 ntBASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.623-201ENST00000411128 95 ntBASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC063979.1-201ENST00000415539 377 ntBASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AL096701.2-201ENST00000416920 238 ntBASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RPL30P3-201ENST00000424262 333 ntBASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 MTCO1P39-201ENST00000426148 480 ntBASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC011742.1-201ENST00000431448 434 ntBASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC007395.1-201ENST00000451333 677 ntBASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 HMGN1P11-201ENST00000508668 303 ntBASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RNU7-175P-201ENST00000515915 61 ntBASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RPL23AP78-201ENST00000599928 470 ntBASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RMST_4.1-201ENST00000616886 107 ntBASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 STK31-205ENST00000433467 3085 ntTSL 2 BASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC093535.2-201ENST00000624769 2326 ntBASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 FTLP6-201ENST00000355274 422 ntBASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RNU6-449P-201ENST00000383914 107 ntBASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.405-201ENST00000383979 100 ntBASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.451-201ENST00000384200 100 ntBASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.524-201ENST00000384564 100 ntBASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RNU6-1179P-201ENST00000384667 107 ntBASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.561-201ENST00000384694 100 ntBASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.569-201ENST00000384749 103 ntBASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 EIF4A1P11-201ENST00000451239 222 ntBASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC079354.2-201ENST00000453523 154 ntBASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC010683.1-201ENST00000473673 378 ntBASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC022795.1-201ENST00000473808 480 ntBASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 KC877373.1-201ENST00000479066 408 ntBASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RPS15AP34-201ENST00000487776 387 ntBASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC018442.3-201ENST00000523025 183 ntBASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC069240.1-201ENST00000548774 375 ntBASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 EIF4BP1-201ENST00000554881 351 ntBASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC5.22□□□□□ -1.57
SENP3-EIF4A1A0A087X0R7 AC007685.1-201ENST00000329806 452 ntBASIC5.21□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 RNU6-1130P-201ENST00000365434 107 ntBASIC5.21□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 RNU6-339P-201ENST00000384310 107 ntBASIC5.21□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 RPL21P17-201ENST00000397467 475 ntBASIC5.21□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 MIR1261-201ENST00000408659 82 ntBASIC5.21□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC5.21□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 HSPD1P21-201ENST00000436541 245 ntBASIC5.21□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 RPL7L1P1-201ENST00000448259 785 ntBASIC5.21□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 RNU4ATAC17P-201ENST00000517272 120 ntBASIC5.21□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC5.21□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 OR4H12P-201ENST00000556269 907 ntBASIC5.21□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC006272.2-201ENST00000594725 163 ntBASIC5.21□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC011476.5-201ENST00000615594 130 ntBASIC5.21□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC5.21□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.21□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC5.21□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 SNORA48.5-201ENST00000391143 135 ntBASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 RNU6-651P-201ENST00000411040 105 ntBASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 TRAPPC2P5-201ENST00000426293 308 ntBASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 RNU5F-8P-201ENST00000515941 111 ntBASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 MIR892C-201ENST00000516410 77 ntBASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AP005660.1-201ENST00000522972 293 ntBASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AL359881.1-201ENST00000602916 267 ntBASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 BRDTP1-201ENST00000605735 677 ntBASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 AC073349.3-201ENST00000617616 186 ntBASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC5.2□□□□□ -1.58
SENP3-EIF4A1A0A087X0R7 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 249.9 ms