Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC6.4□□□□□ -1.39
CCDC61Q9Y6R9 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC61Q9Y6R9 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC61Q9Y6R9 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC61Q9Y6R9 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC61Q9Y6R9 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC61Q9Y6R9 SALL4P2-201ENST00000423288 2910 ntBASIC6.39□□□□□ -1.39
CCDC61Q9Y6R9 RNU1-62P-201ENST00000362599 164 ntBASIC6.39□□□□□ -1.39
CCDC61Q9Y6R9 Y_RNA.85-201ENST00000363014 111 ntBASIC6.39□□□□□ -1.39
CCDC61Q9Y6R9 RNU6-454P-201ENST00000364292 107 ntBASIC6.39□□□□□ -1.39
CCDC61Q9Y6R9 RNU6-1141P-201ENST00000364520 107 ntBASIC6.39□□□□□ -1.39
CCDC61Q9Y6R9 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC61Q9Y6R9 RNU6-1074P-201ENST00000383995 104 ntBASIC6.39□□□□□ -1.39
CCDC61Q9Y6R9 SDHCP2-201ENST00000398565 501 ntBASIC6.39□□□□□ -1.39
CCDC61Q9Y6R9 RN7SKP61-201ENST00000410642 295 ntBASIC6.39□□□□□ -1.39
CCDC61Q9Y6R9 AC007919.1-201ENST00000429380 217 ntBASIC6.39□□□□□ -1.39
CCDC61Q9Y6R9 AP000705.1-201ENST00000454567 350 ntBASIC6.39□□□□□ -1.39
CCDC61Q9Y6R9 UBE2Q2P9-201ENST00000490086 202 ntBASIC6.39□□□□□ -1.39
CCDC61Q9Y6R9 RNU6-107P-201ENST00000516643 102 ntBASIC6.39□□□□□ -1.39
CCDC61Q9Y6R9 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC6.39□□□□□ -1.39
CCDC61Q9Y6R9 AC134878.1-201ENST00000619901 243 ntBASIC6.39□□□□□ -1.39
CCDC61Q9Y6R9 AC009831.4-201ENST00000620744 325 ntBASIC6.39□□□□□ -1.39
CCDC61Q9Y6R9 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC61Q9Y6R9 ZNF720P1-201ENST00000562403 1939 ntBASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 AC092268.1-201ENST00000342691 405 ntBASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 SNORD115-30-201ENST00000364117 82 ntBASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 MIR488-201ENST00000365739 83 ntBASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 MIR1193-201ENST00000408109 78 ntBASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 RPS29P17-201ENST00000430795 166 ntBASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 AC007215.1-201ENST00000464893 276 ntBASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 RN7SKP43-201ENST00000516173 320 ntBASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 AL356575.1-201ENST00000603008 283 ntBASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC6.38□□□□□ -1.39
CCDC61Q9Y6R9 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC61Q9Y6R9 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC61Q9Y6R9 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC61Q9Y6R9 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC61Q9Y6R9 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC6.37□□□□□ -1.39
CCDC61Q9Y6R9 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC61Q9Y6R9 RNU6-173P-201ENST00000364215 104 ntBASIC6.37□□□□□ -1.39
CCDC61Q9Y6R9 NDUFS5P4-201ENST00000412983 318 ntBASIC6.37□□□□□ -1.39
CCDC61Q9Y6R9 RN7SL303P-201ENST00000469773 251 ntBASIC6.37□□□□□ -1.39
CCDC61Q9Y6R9 AC025647.1-201ENST00000517879 253 ntBASIC6.37□□□□□ -1.39
CCDC61Q9Y6R9 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC6.37□□□□□ -1.39
CCDC61Q9Y6R9 AC019159.1-201ENST00000605094 187 ntBASIC6.37□□□□□ -1.39
CCDC61Q9Y6R9 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC6.37□□□□□ -1.39
CCDC61Q9Y6R9 ZNF402P-201ENST00000404435 3100 ntBASIC6.37□□□□□ -1.39
CCDC61Q9Y6R9 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC61Q9Y6R9 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC61Q9Y6R9 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC61Q9Y6R9 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 SNORD56.1-201ENST00000362913 68 ntBASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 SNORA18.3-201ENST00000384122 132 ntBASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 SNORD12C-201ENST00000386307 89 ntBASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 AC012306.1-201ENST00000423267 114 ntBASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 AC078809.1-201ENST00000427601 140 ntBASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 RNA5SP291-201ENST00000517222 105 ntBASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 AL359198.2-201ENST00000611836 194 ntBASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 AC114781.5-201ENST00000615297 108 ntBASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 GVINP1-202ENST00000531871 7271 ntBASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
CCDC61Q9Y6R9 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC61Q9Y6R9 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
CCDC61Q9Y6R9 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC6.35□□□□□ -1.39
CCDC61Q9Y6R9 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
CCDC61Q9Y6R9 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC6.35□□□□□ -1.39
CCDC61Q9Y6R9 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC6.35□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 282.6 ms