Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
CCDC43Q96MW1 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
CCDC43Q96MW1 SNORA70B-201ENST00000384210 135 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 RPS3AP36-201ENST00000398190 775 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC2.45□□□□□ -2.02
CCDC43Q96MW1 USP9YP27-201ENST00000418455 438 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.45□□□□□ -2.02
CCDC43Q96MW1 DPH3P2-201ENST00000422618 250 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC2.45□□□□□ -2.02
CCDC43Q96MW1 MED13P1-201ENST00000428342 171 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC43Q96MW1 AL627311.1-201ENST00000431514 115 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 AL139415.2-201ENST00000431968 163 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 AC018634.1-201ENST00000437554 401 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.45□□□□□ -2.02
CCDC43Q96MW1 MTND1P30-201ENST00000441241 901 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 AL161788.1-201ENST00000441805 169 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 CYP2C59P-201ENST00000457790 269 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 MED28P2-201ENST00000475771 317 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 RBBP4P6-201ENST00000508098 202 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 FABP5P5-201ENST00000515537 406 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 RNU6-759P-201ENST00000516740 103 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 RNU2-46P-201ENST00000517038 113 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.45□□□□□ -2.02
CCDC43Q96MW1 AC022616.3-201ENST00000523940 148 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 FAM92A1P1-201ENST00000528023 890 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 PSMA3P-201ENST00000555485 635 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 MYL12BP1-201ENST00000569826 507 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 MIR4760-201ENST00000585040 80 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 MIR548AC-201ENST00000585049 88 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC43Q96MW1 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2.45□□□□□ -2.02
CCDC43Q96MW1 AC096772.1-201ENST00000609146 564 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 AC091304.9-201ENST00000612091 226 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 AC009831.4-201ENST00000620744 325 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 RBBP8P1-201ENST00000449447 1844 ntBASIC2.45□□□□□ -2.02
CCDC43Q96MW1 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
CCDC43Q96MW1 RNU6-942P-201ENST00000363002 107 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 SNORD114-19-201ENST00000363072 75 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 RNY1P12-201ENST00000364251 105 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 RNA5SP240-201ENST00000365355 128 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 MIR10A-201ENST00000385043 110 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
CCDC43Q96MW1 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
CCDC43Q96MW1 AL031577.2-201ENST00000404133 280 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 RNU6-1140P-201ENST00000410517 106 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 RN7SKP223-201ENST00000410582 62 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 RNA5SP270-201ENST00000411361 118 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 AL031779.1-201ENST00000415663 330 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 AC138623.1-201ENST00000418060 216 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.44□□□□□ -2.02
CCDC43Q96MW1 AIMP1P2-201ENST00000425294 312 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.44□□□□□ -2.02
CCDC43Q96MW1 AC016691.1-201ENST00000441321 413 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 AL031659.1-201ENST00000447075 539 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 RNA5SP200-201ENST00000516360 103 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 AC106038.2-201ENST00000520706 568 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 AP000889.2-201ENST00000532684 490 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.44□□□□□ -2.02
CCDC43Q96MW1 MTCYBP33-201ENST00000575007 1130 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.44□□□□□ -2.02
CCDC43Q96MW1 AL713866.2-201ENST00000603579 219 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 AC092354.1-201ENST00000606057 376 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
CCDC43Q96MW1 AC122133.1-201ENST00000613964 233 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 AF246928.1-201ENST00000623768 87 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 AL157786.1-207ENST00000627771 695 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 MTND4P4-201ENST00000439033 1366 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 MTND5P6-201ENST00000422338 1798 ntBASIC2.44□□□□□ -2.02
CCDC43Q96MW1 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.43□□□□□ -2.02
CCDC43Q96MW1 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
CCDC43Q96MW1 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
CCDC43Q96MW1 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
CCDC43Q96MW1 Y_RNA.22-201ENST00000362492 102 ntBASIC2.43□□□□□ -2.02
CCDC43Q96MW1 RNU6-553P-201ENST00000364047 96 ntBASIC2.43□□□□□ -2.02
CCDC43Q96MW1 SNORA20.2-201ENST00000383922 131 ntBASIC2.43□□□□□ -2.02
CCDC43Q96MW1 RNU6-1032P-201ENST00000384100 107 ntBASIC2.43□□□□□ -2.02
CCDC43Q96MW1 RNU6-72P-201ENST00000384285 79 ntBASIC2.43□□□□□ -2.02
CCDC43Q96MW1 RNU6-1179P-201ENST00000384667 107 ntBASIC2.43□□□□□ -2.02
CCDC43Q96MW1 MIR578-201ENST00000384828 96 ntBASIC2.43□□□□□ -2.02
CCDC43Q96MW1 RNU2-8P-201ENST00000410727 190 ntBASIC2.43□□□□□ -2.02
CCDC43Q96MW1 RNA5SP111-201ENST00000411386 101 ntBASIC2.43□□□□□ -2.02
CCDC43Q96MW1 AC127391.1-201ENST00000411737 98 ntBASIC2.43□□□□□ -2.02
CCDC43Q96MW1 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC2.43□□□□□ -2.02
CCDC43Q96MW1 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.43□□□□□ -2.02
CCDC43Q96MW1 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC2.43□□□□□ -2.02
CCDC43Q96MW1 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.43□□□□□ -2.02
CCDC43Q96MW1 AC009238.1-201ENST00000442165 424 ntBASIC2.43□□□□□ -2.02
CCDC43Q96MW1 AC096638.1-201ENST00000444678 216 ntBASIC2.43□□□□□ -2.02
CCDC43Q96MW1 AC009237.6-201ENST00000446969 424 ntBASIC2.43□□□□□ -2.02
CCDC43Q96MW1 AC012308.1-201ENST00000451232 178 ntBASIC2.43□□□□□ -2.02
CCDC43Q96MW1 RAP1BP2-201ENST00000478270 544 ntBASIC2.43□□□□□ -2.02
CCDC43Q96MW1 AC104435.1-201ENST00000483483 166 ntBASIC2.43□□□□□ -2.02
CCDC43Q96MW1 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC43Q96MW1 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC43Q96MW1 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
CCDC43Q96MW1 AC008521.1-201ENST00000587471 187 ntBASIC2.43□□□□□ -2.02
CCDC43Q96MW1 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC43Q96MW1 AC093788.1-201ENST00000609356 927 ntBASIC2.43□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 240.8 ms