Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 SNORD59.2-201ENST00000516873 68 ntBASIC1.9□□□□□ -2.11
SCN4AP35499 AP004247.1-201ENST00000531556 1289 ntBASIC1.9□□□□□ -2.11
SCN4AP35499 AC024614.2-201ENST00000577584 372 ntBASIC1.9□□□□□ -2.11
SCN4AP35499 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC1.9□□□□□ -2.11
SCN4AP35499 HSPE1P7-201ENST00000604681 321 ntBASIC1.9□□□□□ -2.11
SCN4AP35499 AC092106.3-201ENST00000611308 722 ntBASIC1.9□□□□□ -2.11
SCN4AP35499 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
SCN4AP35499 MTND5P33-201ENST00000571250 1450 ntBASIC1.9□□□□□ -2.11
SCN4AP35499 AC087359.1-201ENST00000508335 1740 ntBASIC1.9□□□□□ -2.11
SCN4AP35499 AL138713.1-201ENST00000624026 2130 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 RNU6-744P-201ENST00000365557 107 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 RNU6-637P-201ENST00000384050 107 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 RNU6-1316P-201ENST00000384242 108 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
SCN4AP35499 RPL22P18-201ENST00000417197 377 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC1.89□□□□□ -2.11
SCN4AP35499 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC1.89□□□□□ -2.11
SCN4AP35499 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN4AP35499 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN4AP35499 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN4AP35499 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC1.89□□□□□ -2.11
SCN4AP35499 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN4AP35499 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN4AP35499 RPL12P25-201ENST00000455592 494 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN4AP35499 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC1.89□□□□□ -2.11
SCN4AP35499 RPS29P20-201ENST00000489592 171 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 AC034222.1-201ENST00000494052 532 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN4AP35499 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
SCN4AP35499 AC010587.2-201ENST00000511727 448 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 OR5BM1P-201ENST00000512021 366 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 AF131216.2-201ENST00000512316 564 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC1.89□□□□□ -2.11
SCN4AP35499 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN4AP35499 AC008739.2-201ENST00000597006 317 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 VN1R82P-201ENST00000601481 356 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 AC027807.2-201ENST00000616099 408 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 MIR3199-2-201ENST00000636243 86 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 ZNF209P-201ENST00000593450 2304 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SCN4AP35499 RNU5A-1-201ENST00000362698 116 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 Y_RNA.302-201ENST00000364997 102 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 MIR517C-201ENST00000385103 95 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 U3.20-201ENST00000390909 217 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.89□□□□□ -2.11
SCN4AP35499 PPP1R11P2-201ENST00000423543 382 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 AC233728.2-201ENST00000425348 757 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 TAAR7P-201ENST00000436141 242 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
SCN4AP35499 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN4AP35499 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC1.89□□□□□ -2.11
SCN4AP35499 TRGVB-201ENST00000453257 471 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.89□□□□□ -2.11
SCN4AP35499 AC010099.1-201ENST00000455434 375 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN4AP35499 HMGB1P36-201ENST00000487709 576 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 AC114981.1-201ENST00000503897 678 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 AC025755.1-201ENST00000521306 278 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN4AP35499 AC023538.1-201ENST00000534576 736 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC1.89□□□□□ -2.11
SCN4AP35499 CYCSP2-201ENST00000558168 301 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 MIR544B-201ENST00000582372 78 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 AC072039.2-201ENST00000608883 439 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 AP000254.1-201ENST00000609934 520 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 AC079395.3-201ENST00000615161 484 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.89□□□□□ -2.11
SCN4AP35499 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN4AP35499 MIR203B-201ENST00000636080 86 ntBASIC1.89□□□□□ -2.11
SCN4AP35499 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
SCN4AP35499 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
SCN4AP35499 RNA5SP489-201ENST00000410986 109 ntBASIC1.88□□□□□ -2.11
SCN4AP35499 RNU2-25P-201ENST00000411041 191 ntBASIC1.88□□□□□ -2.11
SCN4AP35499 AC078974.1-201ENST00000411597 223 ntBASIC1.88□□□□□ -2.11
SCN4AP35499 Z85995.1-201ENST00000415547 335 ntBASIC1.88□□□□□ -2.11
SCN4AP35499 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC1.88□□□□□ -2.11
SCN4AP35499 UBE2D3P2-201ENST00000424409 445 ntBASIC1.88□□□□□ -2.11
SCN4AP35499 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.88□□□□□ -2.11
SCN4AP35499 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC1.88□□□□□ -2.11
SCN4AP35499 AC005094.1-201ENST00000440420 368 ntBASIC1.88□□□□□ -2.11
SCN4AP35499 ZNF736P12Y-201ENST00000443152 1243 ntBASIC1.88□□□□□ -2.11
SCN4AP35499 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC1.88□□□□□ -2.11
SCN4AP35499 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.88□□□□□ -2.11
SCN4AP35499 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC1.88□□□□□ -2.11
SCN4AP35499 AC060771.1-201ENST00000582031 164 ntBASIC1.88□□□□□ -2.11
SCN4AP35499 AL161729.4-201ENST00000604650 476 ntBASIC1.88□□□□□ -2.11
SCN4AP35499 AC013244.3-201ENST00000605614 388 ntBASIC1.88□□□□□ -2.11
SCN4AP35499 AL139418.1-201ENST00000613613 177 ntBASIC1.88□□□□□ -2.11
SCN4AP35499 AL050303.3-201ENST00000613704 284 ntBASIC1.88□□□□□ -2.11
SCN4AP35499 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC1.88□□□□□ -2.11
SCN4AP35499 AC009902.3-201ENST00000606235 2172 ntBASIC1.88□□□□□ -2.11
SCN4AP35499 AL354685.2-201ENST00000448218 1447 ntBASIC1.88□□□□□ -2.11
SCN4AP35499 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC1.88□□□□□ -2.11
SCN4AP35499 SDAD1P2-201ENST00000441308 2028 ntBASIC1.87□□□□□ -2.11
SCN4AP35499 RNU6-97P-201ENST00000363387 104 ntBASIC1.87□□□□□ -2.11
SCN4AP35499 RNA5SP325-201ENST00000363756 130 ntBASIC1.87□□□□□ -2.11
SCN4AP35499 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.87□□□□□ -2.11
SCN4AP35499 HMGN2P30-201ENST00000423237 256 ntBASIC1.87□□□□□ -2.11
SCN4AP35499 AC010099.3-201ENST00000423896 409 ntBASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 170 ms