Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AMZ2P1-203ENST00000565833 850 ntBASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC174048.1-201ENST00000603389 144 ntBASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC008962.1-201ENST00000605729 304 ntBASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 MIR8059-201ENST00000620427 81 ntBASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC007998.5-201ENST00000622938 237 ntBASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 MAPK10-253ENST00000641010 4072 ntBASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 Z75746.1-201ENST00000440243 2080 ntBASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC5.57□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 HSPA8P4-201ENST00000511877 1920 ntBASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RFX3-203ENST00000381984 364 ntTSL 3 BASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RNU6-754P-201ENST00000391166 107 ntBASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RPS29P13-201ENST00000402041 169 ntBASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AL030996.1-201ENST00000411430 235 ntBASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 COX6B1P7-201ENST00000430845 235 ntBASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC091021.1-201ENST00000468051 388 ntBASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 Y_RNA.662-201ENST00000516028 97 ntBASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RNU4ATAC10P-201ENST00000516967 122 ntBASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC091144.1-201ENST00000519573 138 ntBASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 SULT1C2P2-201ENST00000562517 294 ntBASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC012119.1-201ENST00000603184 222 ntBASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 U2.14-201ENST00000615943 113 ntBASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AP000560.1-201ENST00000624150 1937 ntBASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 Y_RNA.27-201ENST00000362540 103 ntBASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RNU6-22P-201ENST00000384355 107 ntBASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RNU6-45P-201ENST00000384471 107 ntBASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 Y_RNA.592-201ENST00000410274 109 ntBASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RNA5SP146-201ENST00000410743 123 ntBASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AL359273.1-201ENST00000510918 627 ntBASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RNU6-313P-201ENST00000516317 112 ntBASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC026403.1-201ENST00000518938 295 ntBASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC004024.1-201ENST00000549244 247 ntBASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RPL23AP87-202ENST00000573039 466 ntBASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RN7SL600P-201ENST00000581811 299 ntBASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 FP236240.3-201ENST00000623061 327 ntBASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC005332.5-201ENST00000591222 2919 ntBASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.55□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC011978.2-201ENST00000569835 2054 ntBASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 Y_RNA.8-201ENST00000362353 102 ntBASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RNU6-1020P-201ENST00000363684 107 ntBASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 Y_RNA.439-201ENST00000384119 94 ntBASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 Y_RNA.458-201ENST00000384240 102 ntBASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RNVU1-14-201ENST00000384770 164 ntBASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 MIR128-1-201ENST00000384921 82 ntBASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RNU6-700P-201ENST00000391043 107 ntBASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RNU2-22P-201ENST00000411266 212 ntBASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 TBCAP1-201ENST00000436520 327 ntBASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 CYCSP43-201ENST00000438233 310 ntBASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RPL21P104-201ENST00000464143 478 ntBASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 COX6CP14-201ENST00000469580 174 ntBASIC5.54□□□□□ -1.52
SENP3-EIF4A1A0A087X0R7 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 192.1 ms