Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 RNU6-533P-201ENST00000384144 107 ntBASIC2.68□□□□□ -1.98
CCDC43Q96MW1 HMGN2P35-201ENST00000412164 270 ntBASIC2.68□□□□□ -1.98
CCDC43Q96MW1 RPS15AP12-201ENST00000419498 388 ntBASIC2.68□□□□□ -1.98
CCDC43Q96MW1 AL139413.1-201ENST00000421309 217 ntBASIC2.68□□□□□ -1.98
CCDC43Q96MW1 PTGES3P4-201ENST00000426243 356 ntBASIC2.68□□□□□ -1.98
CCDC43Q96MW1 AC093899.1-201ENST00000457984 376 ntBASIC2.68□□□□□ -1.98
CCDC43Q96MW1 AL139824.2-201ENST00000458731 1095 ntBASIC2.68□□□□□ -1.98
CCDC43Q96MW1 AP001324.2-201ENST00000461163 319 ntBASIC2.68□□□□□ -1.98
CCDC43Q96MW1 AP000852.1-201ENST00000472460 573 ntBASIC2.68□□□□□ -1.98
CCDC43Q96MW1 AC112204.1-201ENST00000502591 103 ntBASIC2.68□□□□□ -1.98
CCDC43Q96MW1 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC43Q96MW1 RNU2-10P-201ENST00000516375 211 ntBASIC2.68□□□□□ -1.98
CCDC43Q96MW1 RNU6-572P-201ENST00000516724 80 ntBASIC2.68□□□□□ -1.98
CCDC43Q96MW1 AP003122.3-201ENST00000526316 255 ntBASIC2.68□□□□□ -1.98
CCDC43Q96MW1 AC084851.1-201ENST00000529105 249 ntBASIC2.68□□□□□ -1.98
CCDC43Q96MW1 OR5BN1P-201ENST00000532955 829 ntBASIC2.68□□□□□ -1.98
CCDC43Q96MW1 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC43Q96MW1 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC43Q96MW1 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC43Q96MW1 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC43Q96MW1 PCMTD1P2-201ENST00000565017 355 ntBASIC2.68□□□□□ -1.98
CCDC43Q96MW1 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC43Q96MW1 MIR4782-201ENST00000577987 79 ntBASIC2.68□□□□□ -1.98
CCDC43Q96MW1 AC022893.3-201ENST00000607665 437 ntBASIC2.68□□□□□ -1.98
CCDC43Q96MW1 AC010678.1-201ENST00000614118 713 ntBASIC2.68□□□□□ -1.98
CCDC43Q96MW1 AC130324.3-201ENST00000614165 542 ntBASIC2.68□□□□□ -1.98
CCDC43Q96MW1 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC43Q96MW1 MIR1291-201ENST00000627649 87 ntBASIC2.68□□□□□ -1.98
CCDC43Q96MW1 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
CCDC43Q96MW1 MTND5P30-201ENST00000452896 1731 ntBASIC2.68□□□□□ -1.98
CCDC43Q96MW1 RNU6-501P-201ENST00000364072 100 ntBASIC2.67□□□□□ -1.98
CCDC43Q96MW1 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC43Q96MW1 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC43Q96MW1 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC43Q96MW1 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC43Q96MW1 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC43Q96MW1 SUMO1P4-201ENST00000429430 302 ntBASIC2.67□□□□□ -1.98
CCDC43Q96MW1 AL365184.2-201ENST00000431139 435 ntBASIC2.67□□□□□ -1.98
CCDC43Q96MW1 AL591212.2-201ENST00000433923 257 ntBASIC2.67□□□□□ -1.98
CCDC43Q96MW1 CR769767.1-201ENST00000436337 346 ntBASIC2.67□□□□□ -1.98
CCDC43Q96MW1 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC43Q96MW1 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC43Q96MW1 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC43Q96MW1 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC43Q96MW1 AC026436.1-201ENST00000510537 270 ntBASIC2.67□□□□□ -1.98
CCDC43Q96MW1 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC43Q96MW1 RN7SKP265-201ENST00000516448 223 ntBASIC2.67□□□□□ -1.98
CCDC43Q96MW1 OR4R1P-201ENST00000529879 463 ntBASIC2.67□□□□□ -1.98
CCDC43Q96MW1 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC43Q96MW1 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC43Q96MW1 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC2.67□□□□□ -1.98
CCDC43Q96MW1 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC43Q96MW1 MTCYBP22-201ENST00000603788 447 ntBASIC2.67□□□□□ -1.98
CCDC43Q96MW1 AC105129.3-201ENST00000605455 485 ntBASIC2.67□□□□□ -1.98
CCDC43Q96MW1 AC005332.10-201ENST00000612725 619 ntBASIC2.67□□□□□ -1.98
CCDC43Q96MW1 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC2.67□□□□□ -1.98
CCDC43Q96MW1 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC43Q96MW1 AC006927.3-201ENST00000638789 384 ntBASIC2.67□□□□□ -1.98
CCDC43Q96MW1 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.67□□□□□ -1.98
CCDC43Q96MW1 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC43Q96MW1 AL109809.4-201ENST00000603520 2185 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
CCDC43Q96MW1 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
CCDC43Q96MW1 Y_RNA.534-201ENST00000384599 112 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 MIR301A-201ENST00000385261 86 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 MTCYBP36-201ENST00000404146 440 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 RNU6-920P-201ENST00000410926 92 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 AC092809.3-201ENST00000415453 231 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 BX276092.3-201ENST00000424182 230 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 AL593851.1-201ENST00000426171 157 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC43Q96MW1 AL512286.1-201ENST00000439244 400 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.66□□□□□ -1.98
CCDC43Q96MW1 DYNLL1P5-201ENST00000467158 270 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.66□□□□□ -1.98
CCDC43Q96MW1 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC43Q96MW1 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC43Q96MW1 RPL23AP94-201ENST00000512518 302 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 AC118465.1-201ENST00000513820 1271 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 SNORA3.4-201ENST00000515969 96 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 RNU6-914P-201ENST00000516749 109 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 RNU6-677P-201ENST00000516914 101 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 RNU1-104P-201ENST00000517280 175 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC43Q96MW1 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC43Q96MW1 AP002770.2-201ENST00000543613 532 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 LINC00933-203ENST00000559812 219 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 AC105137.2-201ENST00000569073 466 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
CCDC43Q96MW1 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC2.66□□□□□ -1.98
CCDC43Q96MW1 AC069294.1-201ENST00000608397 350 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 AL355816.2-201ENST00000610049 647 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 AC104010.1-201ENST00000616889 150 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 AL449363.1-201ENST00000617815 186 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 AC093536.2-201ENST00000565257 1406 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 AL359854.1-201ENST00000614203 1594 ntBASIC2.66□□□□□ -1.98
CCDC43Q96MW1 RNU6-500P-201ENST00000362349 107 ntBASIC2.65□□□□□ -1.99
CCDC43Q96MW1 RNU5F-6P-201ENST00000362979 116 ntBASIC2.65□□□□□ -1.99
CCDC43Q96MW1 RNU6-960P-201ENST00000364056 120 ntBASIC2.65□□□□□ -1.99
CCDC43Q96MW1 RNA5SP125-201ENST00000364843 120 ntBASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 192.2 ms