Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 7SK.7-201ENST00000603504 247 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 uc_338.12-201ENST00000616344 181 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 AC040168.1-201ENST00000623594 991 ntBASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC1.88□□□□□ -2.11
SHANK3Q9BYB0 AC138915.1-201ENST00000565427 1685 ntBASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 SUCLA2P2-201ENST00000417269 1309 ntBASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 RNU6-1155P-201ENST00000363554 107 ntBASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 MTCO1P56-201ENST00000401674 224 ntBASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 UBE2D3P2-201ENST00000424409 445 ntBASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 MTCO2P1-201ENST00000424648 477 ntBASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 RPS6P15-201ENST00000431996 751 ntBASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 AC090774.1-201ENST00000435925 246 ntBASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 AL078601.1-201ENST00000444542 271 ntBASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 MTCYBP11-201ENST00000447254 1109 ntBASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 RNA5SP310-201ENST00000459084 116 ntBASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 NAA50-206ENST00000493454 964 ntTSL 2 BASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 MTCYBP18-201ENST00000501056 747 ntBASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 LRRC6P1-201ENST00000532188 885 ntBASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 AC087894.1-201ENST00000538359 518 ntBASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 AC007229.1-201ENST00000590455 412 ntBASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 VN1R87P-201ENST00000596706 487 ntBASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 MIR6840-201ENST00000611937 71 ntBASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 AC024257.5-201ENST00000612739 531 ntBASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 AC243773.3-201ENST00000613270 256 ntBASIC1.87□□□□□ -2.11
SHANK3Q9BYB0 AL356473.1-201ENST00000406203 1408 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 RNA5SP62-201ENST00000363457 110 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 CD24P4-201ENST00000382840 243 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 RNU6-1105P-201ENST00000384774 107 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 RNU2-42P-201ENST00000410697 113 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AL356867.1-201ENST00000429623 299 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 COX6CP18-201ENST00000448769 222 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AC005297.2-201ENST00000450430 606 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 RNU6-420P-201ENST00000458780 107 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AC092757.1-201ENST00000467293 467 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AC015908.1-201ENST00000478739 476 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AC108078.1-201ENST00000508073 725 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AC087373.1-201ENST00000524920 491 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 OR4R1P-201ENST00000529879 463 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AC015688.2-201ENST00000584523 262 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AL445435.1-201ENST00000604232 665 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AL161629.2-201ENST00000615347 275 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AC253576.2-201ENST00000618815 580 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 Z82195.2-201ENST00000612348 18351 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 RNA5SP457-201ENST00000363657 124 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 RNU6-878P-201ENST00000384578 110 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 MIR1290-201ENST00000408735 78 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 USP9YP19-201ENST00000412165 485 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 USP9YP21-201ENST00000420603 432 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 HMGN2P30-201ENST00000423237 256 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AL513185.2-201ENST00000425543 193 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 ARF4P4-201ENST00000439608 520 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 MTCYBP42-201ENST00000444653 1130 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AC244505.3-201ENST00000454598 187 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 RPL31P41-201ENST00000477967 372 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 RNU6-467P-201ENST00000517027 110 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AC025755.1-201ENST00000521306 278 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AP001189.2-201ENST00000527320 189 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 CR383656.8-201ENST00000549046 145 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AC125611.2-201ENST00000551907 647 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 MIR4637-201ENST00000582405 84 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AC105224.1-201ENST00000587055 421 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AC012640.5-201ENST00000623897 319 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 AP003485.1-201ENST00000625093 753 ntBASIC1.86□□□□□ -2.11
SHANK3Q9BYB0 IL33-203ENST00000456383 2501 ntTSL 5 BASIC1.85□□□□□ -2.11
SHANK3Q9BYB0 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.85□□□□□ -2.11
SHANK3Q9BYB0 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
SHANK3Q9BYB0 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC1.85□□□□□ -2.11
SHANK3Q9BYB0 SNORA70.7-201ENST00000384159 133 ntBASIC1.85□□□□□ -2.11
SHANK3Q9BYB0 MTCO1P3-201ENST00000429327 192 ntBASIC1.85□□□□□ -2.11
SHANK3Q9BYB0 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC1.85□□□□□ -2.11
SHANK3Q9BYB0 AC024082.2-201ENST00000434771 238 ntBASIC1.85□□□□□ -2.11
SHANK3Q9BYB0 AC093155.1-201ENST00000440164 826 ntBASIC1.85□□□□□ -2.11
SHANK3Q9BYB0 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC1.85□□□□□ -2.11
SHANK3Q9BYB0 AL031183.1-201ENST00000457667 207 ntBASIC1.85□□□□□ -2.11
SHANK3Q9BYB0 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 170.2 ms