Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AL049555.1-201ENST00000562834 1933 ntBASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC008669.1-201ENST00000565823 2178 ntBASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNU6-212P-201ENST00000362642 104 ntBASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 SNORA24.1-201ENST00000384401 135 ntBASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNU6-1127P-201ENST00000384580 107 ntBASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNU6-550P-201ENST00000391057 101 ntBASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 PCNPP3-201ENST00000393579 471 ntBASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AL024474.1-201ENST00000404655 591 ntBASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC005229.2-201ENST00000456995 399 ntBASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 SNORA14.1-201ENST00000516113 141 ntBASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNU6-570P-201ENST00000517051 105 ntBASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 APAF1-207ENST00000547743 651 ntTSL 3 BASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC012669.1-201ENST00000603209 283 ntBASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RAC1P9-201ENST00000604990 392 ntBASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 HSPE1P14-201ENST00000605812 302 ntBASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC019176.2-201ENST00000611579 315 ntBASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 MIR6715A-201ENST00000615929 79 ntBASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC140479.6-201ENST00000633535 357 ntBASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 ST7-212ENST00000422922 1887 ntTSL 5 BASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 CPHL1P-201ENST00000461341 3407 ntBASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 Y_RNA.26-201ENST00000362539 101 ntBASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNA5SP119-201ENST00000362715 117 ntBASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 Y_RNA.274-201ENST00000364714 101 ntBASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 SNORA71.2-201ENST00000364941 134 ntBASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 Y_RNA.506-201ENST00000384494 102 ntBASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNU6-95P-201ENST00000384697 107 ntBASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNA5SP397-201ENST00000391323 118 ntBASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 PRRC2CP1-201ENST00000404428 159 ntBASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNU2-14P-201ENST00000411053 191 ntBASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RPLP0P7-201ENST00000416050 667 ntBASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RPL7P37-201ENST00000425095 738 ntBASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 CYCSP32-201ENST00000440548 321 ntBASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 FCF1P4-201ENST00000448326 183 ntBASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC012671.1-201ENST00000451912 203 ntBASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC087879.1-201ENST00000474343 374 ntBASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AP002770.2-201ENST00000543613 532 ntBASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AL161423.1-201ENST00000613700 262 ntBASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC130454.1-201ENST00000622948 401 ntBASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC091905.2-201ENST00000623143 306 ntBASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC091925.2-201ENST00000625059 256 ntBASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC026523.2-201ENST00000625039 7739 ntBASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC074029.4-201ENST00000624796 1859 ntBASIC5.9□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC5.9□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNY1-201ENST00000364228 113 ntBASIC5.9□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNU6-806P-201ENST00000365147 105 ntBASIC5.9□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNU6-306P-201ENST00000384617 107 ntBASIC5.9□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 SETP5-201ENST00000437270 562 ntBASIC5.9□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RAC1P7-201ENST00000445367 377 ntBASIC5.9□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 MRPL48P1-201ENST00000445390 636 ntBASIC5.9□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AL139109.1-201ENST00000455491 297 ntBASIC5.9□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RPL35AP15-201ENST00000468042 339 ntBASIC5.9□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 UQCRHP4-201ENST00000471686 272 ntBASIC5.9□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 TBCAP3-201ENST00000512475 312 ntBASIC5.9□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 RNU6-513P-201ENST00000516104 104 ntBASIC5.9□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.9□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 DYNLL1P4-201ENST00000549314 266 ntBASIC5.9□□□□□ -1.46
SENP3-EIF4A1A0A087X0R7 SARNP-203ENST00000552080 726 ntTSL 2 BASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 198.5 ms