Protein–RNA interactions for Protein: Q99M85

Scrt1, Transcriptional repressor scratch 1, mousemouse

Predictions only

Length 348 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scrt1Q99M85 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
Scrt1Q99M85 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Scrt1Q99M85 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Scrt1Q99M85 Gm7332-201ENSMUST00000118351 454 ntBASIC20.38■□□□□ 0.85
Scrt1Q99M85 Pkd1-207ENSMUST00000228550 1050 ntBASIC20.38■□□□□ 0.85
Scrt1Q99M85 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Scrt1Q99M85 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC20.38■□□□□ 0.85
Scrt1Q99M85 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC20.37■□□□□ 0.85
Scrt1Q99M85 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scrt1Q99M85 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Scrt1Q99M85 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC20.37■□□□□ 0.85
Scrt1Q99M85 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC20.37■□□□□ 0.85
Scrt1Q99M85 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scrt1Q99M85 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scrt1Q99M85 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scrt1Q99M85 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Scrt1Q99M85 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Scrt1Q99M85 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Scrt1Q99M85 Pcf11-205ENSMUST00000208255 1720 ntBASIC20.36■□□□□ 0.85
Scrt1Q99M85 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Scrt1Q99M85 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Scrt1Q99M85 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Scrt1Q99M85 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Scrt1Q99M85 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Scrt1Q99M85 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC20.35■□□□□ 0.85
Scrt1Q99M85 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Scrt1Q99M85 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Scrt1Q99M85 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
Scrt1Q99M85 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Scrt1Q99M85 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Scrt1Q99M85 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Scrt1Q99M85 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Scrt1Q99M85 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Scrt1Q99M85 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Scrt1Q99M85 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scrt1Q99M85 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scrt1Q99M85 Gm15039-201ENSMUST00000118914 875 ntBASIC20.31■□□□□ 0.84
Scrt1Q99M85 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scrt1Q99M85 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scrt1Q99M85 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scrt1Q99M85 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Scrt1Q99M85 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scrt1Q99M85 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scrt1Q99M85 Gm45364-201ENSMUST00000210883 159 ntBASIC20.29■□□□□ 0.84
Scrt1Q99M85 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scrt1Q99M85 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scrt1Q99M85 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scrt1Q99M85 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scrt1Q99M85 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Scrt1Q99M85 Mir3960-201ENSMUST00000198213 73 ntBASIC20.28■□□□□ 0.84
Scrt1Q99M85 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Scrt1Q99M85 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scrt1Q99M85 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scrt1Q99M85 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scrt1Q99M85 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
Scrt1Q99M85 AC154454.1-201ENSMUST00000225253 216 ntBASIC20.26■□□□□ 0.83
Scrt1Q99M85 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scrt1Q99M85 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC20.26■□□□□ 0.83
Scrt1Q99M85 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
Scrt1Q99M85 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Scrt1Q99M85 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC20.25■□□□□ 0.83
Scrt1Q99M85 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Scrt1Q99M85 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC20.24■□□□□ 0.83
Scrt1Q99M85 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC20.23■□□□□ 0.83
Scrt1Q99M85 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Scrt1Q99M85 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC20.23■□□□□ 0.83
Scrt1Q99M85 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Scrt1Q99M85 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Scrt1Q99M85 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC20.22■□□□□ 0.83
Scrt1Q99M85 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC20.21■□□□□ 0.83
Scrt1Q99M85 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Scrt1Q99M85 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Scrt1Q99M85 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC20.21■□□□□ 0.83
Scrt1Q99M85 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Scrt1Q99M85 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Scrt1Q99M85 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Scrt1Q99M85 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Scrt1Q99M85 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Scrt1Q99M85 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Scrt1Q99M85 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Scrt1Q99M85 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Scrt1Q99M85 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Scrt1Q99M85 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Scrt1Q99M85 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC20.18■□□□□ 0.82
Scrt1Q99M85 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Scrt1Q99M85 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Scrt1Q99M85 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Scrt1Q99M85 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Scrt1Q99M85 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC20.17■□□□□ 0.82
Scrt1Q99M85 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Scrt1Q99M85 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Scrt1Q99M85 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Scrt1Q99M85 Gm22567-201ENSMUST00000175542 342 ntBASIC20.16■□□□□ 0.82
Scrt1Q99M85 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Scrt1Q99M85 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Scrt1Q99M85 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Scrt1Q99M85 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Scrt1Q99M85 Gm14523-201ENSMUST00000117260 558 ntBASIC20.15■□□□□ 0.82
Scrt1Q99M85 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Scrt1Q99M85 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 9 ms