Protein–RNA interactions for Protein: Q8K4L0

Ddx54, ATP-dependent RNA helicase DDX54, mousemouse

Known RBP Predictions only

Length 874 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx54Q8K4L0 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC31.58■■■□□ 2.65
Ddx54Q8K4L0 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Ddx54Q8K4L0 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC31.57■■■□□ 2.64
Ddx54Q8K4L0 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
Ddx54Q8K4L0 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Ddx54Q8K4L0 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Ddx54Q8K4L0 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
Ddx54Q8K4L0 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC31.55■■■□□ 2.64
Ddx54Q8K4L0 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC31.55■■■□□ 2.64
Ddx54Q8K4L0 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
Ddx54Q8K4L0 Gm5522-201ENSMUST00000189483 1242 ntBASIC31.54■■■□□ 2.64
Ddx54Q8K4L0 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
Ddx54Q8K4L0 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
Ddx54Q8K4L0 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
Ddx54Q8K4L0 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
Ddx54Q8K4L0 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC31.53■■■□□ 2.64
Ddx54Q8K4L0 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
Ddx54Q8K4L0 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
Ddx54Q8K4L0 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
Ddx54Q8K4L0 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
Ddx54Q8K4L0 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Ddx54Q8K4L0 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC31.5■■■□□ 2.63
Ddx54Q8K4L0 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
Ddx54Q8K4L0 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC31.49■■■□□ 2.63
Ddx54Q8K4L0 AC093043.1-201ENSMUST00000226700 898 ntBASIC31.49■■■□□ 2.63
Ddx54Q8K4L0 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC31.47■■■□□ 2.63
Ddx54Q8K4L0 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC31.47■■■□□ 2.63
Ddx54Q8K4L0 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC31.46■■■□□ 2.63
Ddx54Q8K4L0 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC31.45■■■□□ 2.62
Ddx54Q8K4L0 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC31.45■■■□□ 2.62
Ddx54Q8K4L0 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Ddx54Q8K4L0 Gm9905-201ENSMUST00000065740 1845 ntBASIC31.44■■■□□ 2.62
Ddx54Q8K4L0 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC31.44■■■□□ 2.62
Ddx54Q8K4L0 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
Ddx54Q8K4L0 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
Ddx54Q8K4L0 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC31.43■■■□□ 2.62
Ddx54Q8K4L0 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC31.42■■■□□ 2.62
Ddx54Q8K4L0 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC31.42■■■□□ 2.62
Ddx54Q8K4L0 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Ddx54Q8K4L0 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Ddx54Q8K4L0 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
Ddx54Q8K4L0 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
Ddx54Q8K4L0 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC31.4■■■□□ 2.62
Ddx54Q8K4L0 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC31.39■■■□□ 2.62
Ddx54Q8K4L0 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
Ddx54Q8K4L0 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
Ddx54Q8K4L0 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
Ddx54Q8K4L0 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC31.36■■■□□ 2.61
Ddx54Q8K4L0 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Ddx54Q8K4L0 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC31.36■■■□□ 2.61
Ddx54Q8K4L0 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Ddx54Q8K4L0 Gm9812-201ENSMUST00000061934 968 ntBASIC31.36■■■□□ 2.61
Ddx54Q8K4L0 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Ddx54Q8K4L0 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC31.35■■■□□ 2.61
Ddx54Q8K4L0 AC122317.2-201ENSMUST00000218708 1248 ntBASIC31.34■■■□□ 2.61
Ddx54Q8K4L0 Rps24-207ENSMUST00000224568 714 ntBASIC31.34■■■□□ 2.61
Ddx54Q8K4L0 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Ddx54Q8K4L0 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Ddx54Q8K4L0 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Ddx54Q8K4L0 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
Ddx54Q8K4L0 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC31.31■■■□□ 2.6
Ddx54Q8K4L0 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
Ddx54Q8K4L0 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC31.31■■■□□ 2.6
Ddx54Q8K4L0 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
Ddx54Q8K4L0 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC31.3■■■□□ 2.6
Ddx54Q8K4L0 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC31.3■■■□□ 2.6
Ddx54Q8K4L0 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
Ddx54Q8K4L0 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC31.29■■■□□ 2.6
Ddx54Q8K4L0 Gm15820-201ENSMUST00000201566 728 ntBASIC31.29■■■□□ 2.6
Ddx54Q8K4L0 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC31.28■■■□□ 2.6
Ddx54Q8K4L0 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Ddx54Q8K4L0 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC31.28■■■□□ 2.6
Ddx54Q8K4L0 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC31.28■■■□□ 2.6
Ddx54Q8K4L0 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
Ddx54Q8K4L0 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC31.27■■■□□ 2.6
Ddx54Q8K4L0 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Ddx54Q8K4L0 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC31.26■■■□□ 2.59
Ddx54Q8K4L0 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC31.25■■■□□ 2.59
Ddx54Q8K4L0 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Ddx54Q8K4L0 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Ddx54Q8K4L0 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
Ddx54Q8K4L0 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
Ddx54Q8K4L0 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
Ddx54Q8K4L0 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC31.22■■■□□ 2.59
Ddx54Q8K4L0 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC31.22■■■□□ 2.59
Ddx54Q8K4L0 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC31.22■■■□□ 2.59
Ddx54Q8K4L0 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC31.22■■■□□ 2.59
Ddx54Q8K4L0 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
Ddx54Q8K4L0 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC31.22■■■□□ 2.59
Ddx54Q8K4L0 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC31.2■■■□□ 2.59
Ddx54Q8K4L0 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
Ddx54Q8K4L0 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
Ddx54Q8K4L0 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Ddx54Q8K4L0 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC31.19■■■□□ 2.58
Ddx54Q8K4L0 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC31.19■■■□□ 2.58
Ddx54Q8K4L0 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC31.18■■■□□ 2.58
Ddx54Q8K4L0 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
Ddx54Q8K4L0 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
Ddx54Q8K4L0 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC31.18■■■□□ 2.58
Ddx54Q8K4L0 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC31.18■■■□□ 2.58
Retrieved 100 of 76,532 protein–RNA pairs in 74.1 ms