Protein–RNA interactions for Protein: Q80W14

Prpf40b, Pre-mRNA-processing factor 40 homolog B, mousemouse

Predictions only

Length 870 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40bQ80W14 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
Prpf40bQ80W14 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Prpf40bQ80W14 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC26.89■■□□□ 1.9
Prpf40bQ80W14 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC26.88■■□□□ 1.89
Prpf40bQ80W14 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
Prpf40bQ80W14 Gm27502-201ENSMUST00000183495 199 ntBASIC26.88■■□□□ 1.89
Prpf40bQ80W14 Gm30023-201ENSMUST00000197970 889 ntBASIC26.88■■□□□ 1.89
Prpf40bQ80W14 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Prpf40bQ80W14 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC26.88■■□□□ 1.89
Prpf40bQ80W14 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Prpf40bQ80W14 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Prpf40bQ80W14 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Prpf40bQ80W14 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Prpf40bQ80W14 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Prpf40bQ80W14 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC26.86■■□□□ 1.89
Prpf40bQ80W14 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC26.86■■□□□ 1.89
Prpf40bQ80W14 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Prpf40bQ80W14 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Prpf40bQ80W14 Pkd1-207ENSMUST00000228550 1050 ntBASIC26.85■■□□□ 1.89
Prpf40bQ80W14 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Prpf40bQ80W14 Gm22567-201ENSMUST00000175542 342 ntBASIC26.83■■□□□ 1.89
Prpf40bQ80W14 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Prpf40bQ80W14 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC26.82■■□□□ 1.88
Prpf40bQ80W14 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Prpf40bQ80W14 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Prpf40bQ80W14 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Prpf40bQ80W14 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Prpf40bQ80W14 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Prpf40bQ80W14 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC26.8■■□□□ 1.88
Prpf40bQ80W14 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Prpf40bQ80W14 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC26.8■■□□□ 1.88
Prpf40bQ80W14 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
Prpf40bQ80W14 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC26.79■■□□□ 1.88
Prpf40bQ80W14 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC26.78■■□□□ 1.88
Prpf40bQ80W14 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Prpf40bQ80W14 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC26.77■■□□□ 1.88
Prpf40bQ80W14 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC26.77■■□□□ 1.88
Prpf40bQ80W14 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC26.77■■□□□ 1.88
Prpf40bQ80W14 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC26.77■■□□□ 1.88
Prpf40bQ80W14 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC26.76■■□□□ 1.87
Prpf40bQ80W14 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC26.75■■□□□ 1.87
Prpf40bQ80W14 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Prpf40bQ80W14 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
Prpf40bQ80W14 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Prpf40bQ80W14 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Prpf40bQ80W14 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
Prpf40bQ80W14 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Prpf40bQ80W14 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC26.73■■□□□ 1.87
Prpf40bQ80W14 AC154454.1-201ENSMUST00000225253 216 ntBASIC26.73■■□□□ 1.87
Prpf40bQ80W14 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Prpf40bQ80W14 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
Prpf40bQ80W14 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC26.72■■□□□ 1.87
Prpf40bQ80W14 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
Prpf40bQ80W14 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Prpf40bQ80W14 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Prpf40bQ80W14 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC26.7■■□□□ 1.86
Prpf40bQ80W14 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Prpf40bQ80W14 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
Prpf40bQ80W14 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Prpf40bQ80W14 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC26.69■■□□□ 1.86
Prpf40bQ80W14 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Prpf40bQ80W14 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Prpf40bQ80W14 Mir3960-201ENSMUST00000198213 73 ntBASIC26.68■■□□□ 1.86
Prpf40bQ80W14 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Prpf40bQ80W14 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Prpf40bQ80W14 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
Prpf40bQ80W14 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Prpf40bQ80W14 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC26.66■■□□□ 1.86
Prpf40bQ80W14 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC26.65■■□□□ 1.86
Prpf40bQ80W14 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Prpf40bQ80W14 Gm45364-201ENSMUST00000210883 159 ntBASIC26.64■■□□□ 1.86
Prpf40bQ80W14 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Prpf40bQ80W14 Gm5812-201ENSMUST00000061073 957 ntBASIC26.63■■□□□ 1.85
Prpf40bQ80W14 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Prpf40bQ80W14 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Prpf40bQ80W14 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Prpf40bQ80W14 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC26.62■■□□□ 1.85
Prpf40bQ80W14 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
Prpf40bQ80W14 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Prpf40bQ80W14 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Prpf40bQ80W14 Gm14523-201ENSMUST00000117260 558 ntBASIC26.61■■□□□ 1.85
Prpf40bQ80W14 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
Prpf40bQ80W14 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Prpf40bQ80W14 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Prpf40bQ80W14 Pcf11-205ENSMUST00000208255 1720 ntBASIC26.6■■□□□ 1.85
Prpf40bQ80W14 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC26.6■■□□□ 1.85
Prpf40bQ80W14 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Prpf40bQ80W14 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Prpf40bQ80W14 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC26.59■■□□□ 1.85
Prpf40bQ80W14 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Prpf40bQ80W14 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC26.58■■□□□ 1.85
Prpf40bQ80W14 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Prpf40bQ80W14 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Prpf40bQ80W14 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC26.57■■□□□ 1.84
Prpf40bQ80W14 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC26.57■■□□□ 1.84
Prpf40bQ80W14 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Prpf40bQ80W14 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Prpf40bQ80W14 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Prpf40bQ80W14 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC26.56■■□□□ 1.84
Prpf40bQ80W14 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC26.56■■□□□ 1.84
Retrieved 100 of 76,532 protein–RNA pairs in 15.1 ms