Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav6-3Q5R1E6 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav6-3Q5R1E6 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trav6-3Q5R1E6 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav6-3Q5R1E6 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav6-3Q5R1E6 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav6-3Q5R1E6 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav6-3Q5R1E6 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav6-3Q5R1E6 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trav6-3Q5R1E6 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav6-3Q5R1E6 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trav6-3Q5R1E6 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav6-3Q5R1E6 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Trav6-3Q5R1E6 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav6-3Q5R1E6 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC18.64■□□□□ 0.57
Trav6-3Q5R1E6 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav6-3Q5R1E6 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav6-3Q5R1E6 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav6-3Q5R1E6 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trav6-3Q5R1E6 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav6-3Q5R1E6 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav6-3Q5R1E6 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Trav6-3Q5R1E6 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav6-3Q5R1E6 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav6-3Q5R1E6 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav6-3Q5R1E6 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
Trav6-3Q5R1E6 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav6-3Q5R1E6 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav6-3Q5R1E6 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav6-3Q5R1E6 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav6-3Q5R1E6 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav6-3Q5R1E6 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav6-3Q5R1E6 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trav6-3Q5R1E6 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trav6-3Q5R1E6 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trav6-3Q5R1E6 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trav6-3Q5R1E6 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trav6-3Q5R1E6 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
Trav6-3Q5R1E6 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
Trav6-3Q5R1E6 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav6-3Q5R1E6 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC18.57■□□□□ 0.56
Trav6-3Q5R1E6 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trav6-3Q5R1E6 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav6-3Q5R1E6 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Trav6-3Q5R1E6 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav6-3Q5R1E6 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Trav6-3Q5R1E6 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
Trav6-3Q5R1E6 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav6-3Q5R1E6 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trav6-3Q5R1E6 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav6-3Q5R1E6 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav6-3Q5R1E6 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Trav6-3Q5R1E6 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC18.56■□□□□ 0.56
Trav6-3Q5R1E6 Il17rd-202ENSMUST00000223942 2186 ntBASIC18.56■□□□□ 0.56
Trav6-3Q5R1E6 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav6-3Q5R1E6 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Trav6-3Q5R1E6 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trav6-3Q5R1E6 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav6-3Q5R1E6 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Trav6-3Q5R1E6 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav6-3Q5R1E6 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Trav6-3Q5R1E6 Gm14121-201ENSMUST00000121441 1380 ntBASIC18.55■□□□□ 0.56
Trav6-3Q5R1E6 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav6-3Q5R1E6 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trav6-3Q5R1E6 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC18.54■□□□□ 0.56
Trav6-3Q5R1E6 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav6-3Q5R1E6 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav6-3Q5R1E6 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav6-3Q5R1E6 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav6-3Q5R1E6 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Trav6-3Q5R1E6 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trav6-3Q5R1E6 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav6-3Q5R1E6 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
Trav6-3Q5R1E6 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trav6-3Q5R1E6 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav6-3Q5R1E6 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav6-3Q5R1E6 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav6-3Q5R1E6 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav6-3Q5R1E6 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav6-3Q5R1E6 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trav6-3Q5R1E6 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Trav6-3Q5R1E6 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav6-3Q5R1E6 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav6-3Q5R1E6 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
Trav6-3Q5R1E6 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Trav6-3Q5R1E6 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Trav6-3Q5R1E6 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Trav6-3Q5R1E6 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Trav6-3Q5R1E6 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav6-3Q5R1E6 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav6-3Q5R1E6 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC18.46■□□□□ 0.55
Trav6-3Q5R1E6 Gm42699-201ENSMUST00000198104 1657 ntBASIC18.46■□□□□ 0.55
Trav6-3Q5R1E6 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Trav6-3Q5R1E6 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav6-3Q5R1E6 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC18.45■□□□□ 0.54
Trav6-3Q5R1E6 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav6-3Q5R1E6 Nkain2-201ENSMUST00000092602 558 ntBASIC18.45■□□□□ 0.54
Trav6-3Q5R1E6 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Trav6-3Q5R1E6 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Trav6-3Q5R1E6 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 13.1 ms