Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cd40lgP27548 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Cd40lgP27548 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cd40lgP27548 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cd40lgP27548 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cd40lgP27548 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC21.21■□□□□ 0.99
Cd40lgP27548 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cd40lgP27548 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC21.2■□□□□ 0.98
Cd40lgP27548 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cd40lgP27548 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC21.2■□□□□ 0.98
Cd40lgP27548 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cd40lgP27548 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Cd40lgP27548 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cd40lgP27548 Amer2-203ENSMUST00000225247 2662 ntBASIC21.19■□□□□ 0.98
Cd40lgP27548 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cd40lgP27548 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cd40lgP27548 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Cd40lgP27548 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cd40lgP27548 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cd40lgP27548 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cd40lgP27548 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cd40lgP27548 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Cd40lgP27548 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Cd40lgP27548 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cd40lgP27548 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cd40lgP27548 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cd40lgP27548 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Cd40lgP27548 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
Cd40lgP27548 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Cd40lgP27548 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC21.16■□□□□ 0.98
Cd40lgP27548 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Cd40lgP27548 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Cd40lgP27548 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC21.15■□□□□ 0.98
Cd40lgP27548 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Cd40lgP27548 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC21.15■□□□□ 0.98
Cd40lgP27548 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cd40lgP27548 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cd40lgP27548 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.98
Cd40lgP27548 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cd40lgP27548 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cd40lgP27548 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Cd40lgP27548 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
Cd40lgP27548 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cd40lgP27548 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cd40lgP27548 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Cd40lgP27548 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cd40lgP27548 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cd40lgP27548 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cd40lgP27548 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cd40lgP27548 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Cd40lgP27548 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Cd40lgP27548 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cd40lgP27548 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cd40lgP27548 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cd40lgP27548 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cd40lgP27548 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cd40lgP27548 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC21.09■□□□□ 0.97
Cd40lgP27548 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC21.09■□□□□ 0.97
Cd40lgP27548 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
Cd40lgP27548 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Cd40lgP27548 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Cd40lgP27548 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC21.07■□□□□ 0.96
Cd40lgP27548 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cd40lgP27548 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cd40lgP27548 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cd40lgP27548 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cd40lgP27548 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cd40lgP27548 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC21.04■□□□□ 0.96
Cd40lgP27548 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
Cd40lgP27548 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cd40lgP27548 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Cd40lgP27548 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Cd40lgP27548 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC21.03■□□□□ 0.96
Cd40lgP27548 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Cd40lgP27548 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Cd40lgP27548 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Cd40lgP27548 Fezf2-202ENSMUST00000224023 1917 ntBASIC21.01■□□□□ 0.95
Cd40lgP27548 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC21■□□□□ 0.95
Cd40lgP27548 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cd40lgP27548 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Cd40lgP27548 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cd40lgP27548 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cd40lgP27548 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Cd40lgP27548 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Cd40lgP27548 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cd40lgP27548 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cd40lgP27548 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cd40lgP27548 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Cd40lgP27548 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cd40lgP27548 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cd40lgP27548 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Cd40lgP27548 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC20.95■□□□□ 0.94
Cd40lgP27548 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Cd40lgP27548 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC20.95■□□□□ 0.94
Cd40lgP27548 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Cd40lgP27548 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cd40lgP27548 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Cd40lgP27548 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cd40lgP27548 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Cd40lgP27548 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 89.9 ms